Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1659 ATGGCTTCCAAGCTCTGCGACTCCTGCAAGTCCGCCGCCGCCACCCTCTTCTGCCGTGCCGACTCCGCCTTCCTCTGCCTCGCCTGCGACTCCAAAGTTCACGCCGCCAACAAGCTCGCTTCTCGCCACGCCCGCGTCTGGCTCTGCGAAGTCTGCGAACAAGCCCCCGCTCACGTCACCTGCAAGGCCGACGCCGCCGCTCTCTGCCTCTCCTGCGACCACGACATCCACTCCGTCAACCCCCTCGCTCGCCGCCACGACCGAGTTCCGGTCACGCCGTTCTACCACTCCTCCGCCTCCGCCGTTAACCCTCCCGCCGCCATCAACTTCCTCGACGACCGTTACCTCTCCGACGTTGACGCCGACGCCGACGCCGTTAGCAGAGAAGAGGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGCCGATCGAAAATCCAGATCTAAACTCAGGCAAATTCGAGTTTCCGGAAATCGATCCTTACCTAGATCTGGATTACAACCATGTGGATGCGAAATTAGAATCGCAAGATCTGAACAGCTCCGGCGCCGATGGAGTCGTTCCGGTTCAGAGCAAACTCGAATCGGTGAACGATCGCTGCTTCGGCATCGATTTCCCCGGCGCTAAATCGTTCCCGTACGGTTACAATCCTCAGTCGATAAGCAACAGTGTATCATCGTCGTCGATCGACGTCGGAGTCGTCCCGGACGGAAACGCGATGACGGAGATATCGAATCCGTACACGAAGCCGACGGCGGAATCGACGGTTGCGCCGCCGCTGCCAATCACGGCGGCGGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAAAGGAAGAACAGAAAGTTTGAGAAGACGATTCGATACGCATCTCGTAAAGCCTACGCCGAGACTAGACCGCGAATCAAAGGACGGTTCGCCAAACGGACCGACACCGAACTTGAGGTAGACCGGGTCGGTGGATACGGCGTCGTTCCATCGTTTTAA 996 58.73 MASKLCDSCKSAAATLFCRADSAFLCLACDSKVHAANKLASRHARVWLCEVCEQAPAHVTCKADAAALCLSCDHDIHSVNPLARRHDRVPVTPFYHSSASAVNPPAAINFLDDRYLSDVDADADAVSREEAEAASWLLPNPNPKPIENPDLNSGKFEFPEIDPYLDLDYNHVDAKLESQDLNSSGADGVVPVQSKLESVNDRCFGIDFPGAKSFPYGYNPQSISNSVSSSSIDVGVVPDGNAMTEISNPYTKPTAESTVAPPLPITAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTELEVDRVGGYGVVPSF 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10666523 10668292 - Sed0001333.1 Sed03g1659 707146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1659 331 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 314 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Sed03g1659 331 CDD Bbox1_BBX-like 48 91 IPR049808 -
Sed03g1659 331 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
Sed03g1659 331 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
Sed03g1659 331 CDD Bbox1_BBX-like 5 48 IPR049808 -
Sed03g1659 331 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
Sed03g1659 331 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Sed03g1659 331 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
Sed03g1659 331 Pfam CCT motif 270 312 IPR010402 GO:0005515(InterPro)
Sed03g1659 331 ProSiteProfiles CCT domain profile. 270 312 IPR010402 GO:0005515(InterPro)
Sed03g1659 331 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1659 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1659 Sed-Chr3:10666523 Sed08g0523 Sed-Chr8:3448521 2.00E-49 dispersed
Sed11g1127 Sed-Chr11:27063716 Sed03g1659 Sed-Chr3:10666523 1.10E-91 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g1659 . 1 331 C2C2-CO-like Transcription Factor Family AT5G24930 63.8 2.7e-76 283.5
Sed11g1127 . 1 307 C2C2-CO-like Transcription Factor Family AT5G24930 56.2 3.7e-65 246.5
Sed01g0594 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed01g0596 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed01g0595 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed01g0601 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed05g3044 . 1 396 C2C2-CO-like Transcription Factor Family AT3G07650 56.6 2.1e-87 320.5
Sed05g3045 . 1 396 C2C2-CO-like Transcription Factor Family AT3G07650 56.6 2.1e-87 320.5
Sed05g3046 . 1 396 C2C2-CO-like Transcription Factor Family AT3G07650 56.6 2.1e-87 320.5
Sed05g2113 . 1 397 C2C2-CO-like Transcription Factor Family AT3G07650 53.3 1.1e-80 298.1
Sed05g2114 . 1 397 C2C2-CO-like Transcription Factor Family AT3G07650 53.3 1.1e-80 298.1
Sed04g3748 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.3 1.4e-80 297.7
Sed04g3749 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.3 1.4e-80 297.7
Sed04g3750 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.3 1.4e-80 297.7
Sed01g0597 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0602 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0603 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0599 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0600 . 85 296 C2C2-CO-like Transcription Factor Family AT3G07650 58.1 9.4e-56 215.3
Sed01g0598 . 85 296 C2C2-CO-like Transcription Factor Family AT3G07650 58.1 9.4e-56 215.3
Sed01g0594 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0596 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0595 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0601 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed05g3044 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3045 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3046 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g2113 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed05g2114 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed04g3748 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3749 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3750 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed01g0597 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0602 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0603 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0599 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0600 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed01g0598 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed01g0594 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0596 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0595 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0601 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed05g3044 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3045 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3046 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g2113 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed05g2114 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed04g3748 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3749 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3750 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed01g0597 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0602 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0603 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0599 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0600 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed01g0598 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed04g3907 . 1 198 C2C2-CO-like Transcription Factor Family AT1G75540 56.9 4.8e-51 199.5
Sed04g1531 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.3 1.7e-74 277.3
Sed13g0882 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 62.2 8.2e-55 211.1
Sed07g1631 . 1 176 C2C2-CO-like Transcription Factor Family AT2G21320 63.1 1.6e-53 206.8
Sed10g0979 . 1 144 C2C2-CO-like Transcription Factor Family AT2G21320 65.1 6.7e-49 191.4
Sed13g0882 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 61.2 2.3e-55 213.0
Sed07g1631 . 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 1.3e-53 207.2
Sed10g0979 . 1 143 C2C2-CO-like Transcription Factor Family AT4G38960 67.8 3.4e-51 199.1
Sed04g3907 . 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 56.3 2.4e-52 203.4
Sed03g1716 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.2 1.6e-43 174.1
Sed03g1717 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.2 1.6e-43 174.1
Sed05g3539 . 1 177 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 2.3e-42 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010751 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37879 PF00643 zf-B_box 8.90E-06 No_clan Sed TF