Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1659 ATGGCTTCCAAGCTCTGCGACTCCTGCAAGTCCGCCGCCGCCACCCTCTTCTGCCGTGCCGACTCCGCCTTCCTCTGCCTCGCCTGCGACTCCAAAGTTCACGCCGCCAACAAGCTCGCTTCTCGCCACGCCCGCGTCTGGCTCTGCGAAGTCTGCGAACAAGCCCCCGCTCACGTCACCTGCAAGGCCGACGCCGCCGCTCTCTGCCTCTCCTGCGACCACGACATCCACTCCGTCAACCCCCTCGCTCGCCGCCACGACCGAGTTCCGGTCACGCCGTTCTACCACTCCTCCGCCTCCGCCGTTAACCCTCCCGCCGCCATCAACTTCCTCGACGACCGTTACCTCTCCGACGTTGACGCCGACGCCGACGCCGTTAGCAGAGAAGAGGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGCCGATCGAAAATCCAGATCTAAACTCAGGCAAATTCGAGTTTCCGGAAATCGATCCTTACCTAGATCTGGATTACAACCATGTGGATGCGAAATTAGAATCGCAAGATCTGAACAGCTCCGGCGCCGATGGAGTCGTTCCGGTTCAGAGCAAACTCGAATCGGTGAACGATCGCTGCTTCGGCATCGATTTCCCCGGCGCTAAATCGTTCCCGTACGGTTACAATCCTCAGTCGATAAGCAACAGTGTATCATCGTCGTCGATCGACGTCGGAGTCGTCCCGGACGGAAACGCGATGACGGAGATATCGAATCCGTACACGAAGCCGACGGCGGAATCGACGGTTGCGCCGCCGCTGCCAATCACGGCGGCGGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAAAGGAAGAACAGAAAGTTTGAGAAGACGATTCGATACGCATCTCGTAAAGCCTACGCCGAGACTAGACCGCGAATCAAAGGACGGTTCGCCAAACGGACCGACACCGAACTTGAGGTAGACCGGGTCGGTGGATACGGCGTCGTTCCATCGTTTTAA 996 58.73 MASKLCDSCKSAAATLFCRADSAFLCLACDSKVHAANKLASRHARVWLCEVCEQAPAHVTCKADAAALCLSCDHDIHSVNPLARRHDRVPVTPFYHSSASAVNPPAAINFLDDRYLSDVDADADAVSREEAEAASWLLPNPNPKPIENPDLNSGKFEFPEIDPYLDLDYNHVDAKLESQDLNSSGADGVVPVQSKLESVNDRCFGIDFPGAKSFPYGYNPQSISNSVSSSSIDVGVVPDGNAMTEISNPYTKPTAESTVAPPLPITAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTELEVDRVGGYGVVPSF 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10666523 10668292 - Sed0001333.1 Sed03g1659 707146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1659 331 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 314 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Sed03g1659 331 CDD Bbox1_BBX-like 48 91 IPR049808 -
Sed03g1659 331 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
Sed03g1659 331 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
Sed03g1659 331 CDD Bbox1_BBX-like 5 48 IPR049808 -
Sed03g1659 331 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
Sed03g1659 331 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Sed03g1659 331 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
Sed03g1659 331 Pfam CCT motif 270 312 IPR010402 GO:0005515(InterPro)
Sed03g1659 331 ProSiteProfiles CCT domain profile. 270 312 IPR010402 GO:0005515(InterPro)
Sed03g1659 331 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1659 Sed-Chr3:10666523 Sed08g0523 Sed-Chr8:3448521 2.00E-49 dispersed
Sed11g1127 Sed-Chr11:27063716 Sed03g1659 Sed-Chr3:10666523 1.10E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37879 PF00643 zf-B_box 8.90E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1659 - - - 0.0