Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1669 ATGAACGGTCATGATCCGGAGTCGTTGGTGTACGTTCACGGCGACCTTGAATTGAAGATCATCGAGGCGCGCCAATTGCCTAATATGGATTTATTATCGGAGCGTATTCGGAGATTTTTTACTGTTTTCAATTCTTGTCGGAAACCGTTTTCGAAGAAGGAAATCGATCACCAGCACCACCGGAAGATTATCACCAGTGATCCTTATGTCACCGTCTGTCTCGCCGGAGCGACGGTGGCTCGAACGCGAGTTATTTCGAACTCGCAGAACCCTAACTGGAACGAGCAATTCAAAATCCCTCTCGCTCATCCGGTCTCGCAGGTGGAGTTTCATGTGAAGGATAACGATGTGTTTGGCGCCGATTTGATCGGTATCGCTACCGTCCCTGCACGGAGAATCCTTTCCGGCGAGACCGTACACGATTGGTTTCCGATTATTGGTTCGTTTGGGAAACCTCCGAAACCGGATTCGGCTGTGCTTTTGGAAATGAAATTCACCAAATGTGAGGACAATCCTGTGTACCGGTACGGCATTGCGGCCGATCCCGAGCATTTCGGCGTTCGGAATAGCTATTTTCCGGTCAGGCGTGGGGGTTCGGTAACGCTGTATCAGGATGCGCACGTTCCGGATTCTGTGTTGGAGAAGATTGAAATGGAAAACGGGAATGTGTTTGGTCATGAGAATTGCTGGGAGGATATATGCCATGCGATTTTGGAGGCTCACCATATAGTGTACATCGCCGGTTGGTCCATATATCATAAGGTGAAGCTTGTGAGGGAGCCTTCGAAACCGTTGCCGAAGGGTGGGAATTTGAGCTTGGGAGAGTTGCTCAAGTATAAGTCGCAAGAAGGGGTGCGAGTTTTGTTGTTGGTTTGGGATGACAAGACTTCTCACAGCAAGTTCTTCATCAATACGACTGGAGTGATGCAGACTCATGATGAGGAGACCCGGAAGTTTTTCAAGCACTCTTCTGTGTCATGTGTGCTGTCACCCCGATATGCCAGCAGTAAGCTTAGCATTTTTAAGCAACAGGCACGCTTTATTCCATGGTTCAGTTACATGTTGGTTGTTGGAACCCTTTTTACCCATCATCAGAAGTGTGTGATTGTGGATACTCAAGCATCTGGTAATTATCGGAAGATAAGTTCTTTCATTGGAGGACTTGACCTTTGCGATGGTCGTTATGATACTCCTGATCATCGGTTGTTAAAAGATCTTGACACTGTATTTGAGGATGATTTTCATAATCCAACTTTTCCGGGAGGTACAAAGACTCCTCGGCAGCCTTGGCATGATTTACATTGCAAACTTGAAGGGCCTGCTGCATATGATGTGCTAACTAACTTTGAACAACGATGGCGAAAAGCCACAAAATGGTCTGAATTAGGACAGCGATTCAAAAGAGTGTCGAATTGGCATGAAGACGCTCTAATAAAGGTGGAACGCATATCTTGGATACTCAGTCCATCTCAGTCAGTCCCCAATGACGATCCTTTGTTATGGGTTTCAAAGGAAAATGATCCTGACAAATGGCATGTTCAGGTTTTCCGATCCATAGATTCGGGATCTTTGAAAGGATTTCCCAAAGATGTTTTTCAAGCTGAATTGCAGAATCTTGTTTGTGCAAAAAATTTGGTTATTGACAGAAGTATTCAAACAGCATATATTCAATCAATAAGATCAGCCCAACGTTTCATATACATTGAGAATCAGTATTTTGTTGGATCATCGTTTGCATGGCCTTCATACAAAGAAGCAGGTGCTGATAATCTTATTCCTATGGAGTTGGCGTTGAAGATTGCTAGTAAGATAAGATCCAATGAGAGGTTTGTTGTATACGTCGTAATACCTATGTGGCCAGAGGGTCCTCCGTCTTCTGTCTCTGTGCAAGAAATCCTGTTTTGGCAGGGCCAAACCATTCAAATGATGTATAAAATCATTGCTAGAGAGTTGAAATATAAGAATCTCGAGAATGCTCATCCCTCGGACTACTTAAACTTTTACTGTCTTGGCAACAGGGAACCGACCGGGGACTTGCCATGTTCCTCCAATCATTCTTCCAAGAGCGAATATGTGGTTTCAGACTCGCTGAAGTTCAGTAGATTCATGATATATGTACATGCCAAAGGAATGGTTATTGATGATGAGTATGTAGTAGTAGGGTCTGCAAATATAAATCAAAGATCAATGGCTGGTTCAAGGGACACTGAGATTGCCATGGGTGCATATCAACCCAGTTACACTTGGGGTAAAAAGAAACGACATCCACGAGGCCAGGTTTATGGGTATAGAATGTCACTCTGGGCTGAACATTTGGGAGAGATTGATGATTGCTTTAAGAAGCCTGAAAGTTTAGCTTGTGTGAACACTGTCAACAAGATAGCTGAAGATAACTGGAAGAAATTCACTGCAGCAGAGTATTCGCCATTGCAAGGGCACCTTCTTAAGTACCCGATTGAGGTCAGCCAAAGTGGCAAGATTGGTTCGTTGAGCGGGCACGAGACTTTCCCCGACGTTGGTGGTAAGGTCCTTGGAGCTCGATCTAACCTCCCGGATGCTCTTACTACATAA 2571 44.77 MNGHDPESLVYVHGDLELKIIEARQLPNMDLLSERIRRFFTVFNSCRKPFSKKEIDHQHHRKIITSDPYVTVCLAGATVARTRVISNSQNPNWNEQFKIPLAHPVSQVEFHVKDNDVFGADLIGIATVPARRILSGETVHDWFPIIGSFGKPPKPDSAVLLEMKFTKCEDNPVYRYGIAADPEHFGVRNSYFPVRRGGSVTLYQDAHVPDSVLEKIEMENGNVFGHENCWEDICHAILEAHHIVYIAGWSIYHKVKLVREPSKPLPKGGNLSLGELLKYKSQEGVRVLLLVWDDKTSHSKFFINTTGVMQTHDEETRKFFKHSSVSCVLSPRYASSKLSIFKQQARFIPWFSYMLVVGTLFTHHQKCVIVDTQASGNYRKISSFIGGLDLCDGRYDTPDHRLLKDLDTVFEDDFHNPTFPGGTKTPRQPWHDLHCKLEGPAAYDVLTNFEQRWRKATKWSELGQRFKRVSNWHEDALIKVERISWILSPSQSVPNDDPLLWVSKENDPDKWHVQVFRSIDSGSLKGFPKDVFQAELQNLVCAKNLVIDRSIQTAYIQSIRSAQRFIYIENQYFVGSSFAWPSYKEAGADNLIPMELALKIASKIRSNERFVVYVVIPMWPEGPPSSVSVQEILFWQGQTIQMMYKIIARELKYKNLENAHPSDYLNFYCLGNREPTGDLPCSSNHSSKSEYVVSDSLKFSRFMIYVHAKGMVIDDEYVVVGSANINQRSMAGSRDTEIAMGAYQPSYTWGKKKRHPRGQVYGYRMSLWAEHLGEIDDCFKKPESLACVNTVNKIAEDNWKKFTAAEYSPLQGHLLKYPIEVSQSGKIGSLSGHETFPDVGGKVLGARSNLPDALTT 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10783572 10790322 - Sed0009260.1 Sed03g1669 707156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1669 856 Gene3D Endonuclease Chain A 530 748 - -
Sed03g1669 856 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 359 394 IPR001736 GO:0003824(InterPro)
Sed03g1669 856 FunFam Phospholipase D delta 220 474 - -
Sed03g1669 856 CDD C2_plant_PLD 8 166 - -
Sed03g1669 856 Pfam Phospholipase D Active site motif 704 729 IPR001736 GO:0003824(InterPro)
Sed03g1669 856 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 702 729 IPR001736 GO:0003824(InterPro)
Sed03g1669 856 SUPERFAMILY Phospholipase D/nuclease 547 788 - -
Sed03g1669 856 ProSiteProfiles C2 domain profile. 1 143 IPR000008 -
Sed03g1669 856 Pfam Phospholipase D C terminal 776 846 IPR024632 -
Sed03g1669 856 SMART C2_3c 15 142 IPR000008 -
Sed03g1669 856 Pfam C2 domain 14 144 IPR000008 -
Sed03g1669 856 SMART pld_4 359 394 IPR001736 GO:0003824(InterPro)
Sed03g1669 856 SMART pld_4 702 729 IPR001736 GO:0003824(InterPro)
Sed03g1669 856 PANTHER PHOSPHOLIPASE D 11 844 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Sed03g1669 856 SUPERFAMILY Phospholipase D/nuclease 189 462 - -
Sed03g1669 856 Gene3D C2 domain 12 173 IPR035892 -
Sed03g1669 856 PIRSF PLD_plant 1 856 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Sed03g1669 856 Gene3D Endonuclease Chain A 213 478 - -
Sed03g1669 856 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 12 167 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1669 Sed-Chr3:10783572 Sed11g1113 Sed-Chr11:26832157 0.00E+00 dispersed
Sed11g1112 Sed-Chr11:26832157 Sed03g1669 Sed-Chr3:10783572 0.00E+00 wgd
Sed03g1669 Sed-Chr3:10783572 Sed07g0780 Sed-Chr7:5807850 6.00E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1669 K01115 - csv:101213442 1594.71