Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1691 ATGTCAAACGCCGTCGAAGATCTCCTCCTCCGCCACCGCCACCGCCACCGCCACTCCGATTTCCGATTCCAACTCCTTCATTCCCGCTCTCACCGCCGCTGCGACATGTCCTCCTCCTCGTCTTCTTCTTCTTCTTCTTCTGCGGCGGCTCAACCGATTCCCATGCCCTTCCCTCAGCATCATCGGCCGTCTCCGCCGTCGGATCAATCCAACGCTTGCGACGGCCGTCTCGCTCCCGAGGCACATTCCACTGCCGCTACGCTCTACCTGAAACGAACATATAATATTAATGATGACTCTGAGGCGTTGGCTAGTAAACTAGCTGTAGCCTCTGCGCCGAGGATGCGACCAAATGATTCTTCTTGTGAACCAGTTTCCATTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCCAAGACTCAAAAATCAATAGATGAGCCTCTTGAGGGTCCTAATCTATCTACTAACGGTCGGTACGATAGCTCTTTAGGCTTCTTGACAAAAAAATTTACAAGATTAATTCAGAGCGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTTGAAGGGATAGGGCTTATTGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGTGAAAGGCGTGGGCCTCAAGAGCTCAACGATCAAGTTCGTACATTAAAGGCTGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTTGATGAACTTATAAGAATGAAGCAAGAACATTTGAGACATCTCGAGGAAAATGCAAATCACAGAAAGAACCTTTTTATAACTGAAGAAGACATCTTGCAAATTCCTCGCTTTAAGAATCAGACACTTATAGCAGTTAAAGCTCCCCAAGCTAGCTTTATCGAAGTGCCCGATCCGGATGAGGAAGCTTGTTTTTCTGAGAGACAGTGTAGACTGATCATCAAAAGTACTACTGGGCCAATTGATGTGTACCTTTTGAGGACTGAAAAACAAGAGCTGGAAGAAAGTAGTTCCAAGCAAGCTAAAGTGTCTTTTGAACTGCAGAAGAATCATAAGATGTCTACCAACAACAACAATGCTCGTTGTCCTCCTTTCCAGGAGGATCATGGAATGCAGAGAATTTTACCTTTACATAACAATATAGATGATGATTATTGGTTTGAATCAAATTCTCAAGTGAGTAATTCGCATTTATGGGGTGAGGGACACAACTTTTGA 1272 43.4 MSNAVEDLLLRHRHRHRHSDFRFQLLHSRSHRRCDMSSSSSSSSSSSAAAQPIPMPFPQHHRPSPPSDQSNACDGRLAPEAHSTAATLYLKRTYNINDDSEALASKLAVASAPRMRPNDSSCEPVSIANEKQNKKLKLQKNSKSKTQKSIDEPLEGPNLSTNGRYDSSLGFLTKKFTRLIQSAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVRTLKAEVKSLYADERRLDELIRMKQEHLRHLEENANHRKNLFITEEDILQIPRFKNQTLIAVKAPQASFIEVPDPDEEACFSERQCRLIIKSTTGPIDVYLLRTEKQELEESSSKQAKVSFELQKNHKMSTNNNNARCPPFQEDHGMQRILPLHNNIDDDYWFESNSQVSNSHLWGEGHNF 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10982597 10987808 + Sed0004897.1 Sed03g1691 707178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1691 423 MobiDBLite consensus disorder prediction 109 163 - -
Sed03g1691 423 FunFam E2F transcription factor 1 158 231 - -
Sed03g1691 423 SUPERFAMILY E2F-DP heterodimerization region 240 345 IPR037241 -
Sed03g1691 423 Pfam E2F/DP family winged-helix DNA-binding domain 166 229 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed03g1691 423 SMART E2F_TDP_2 164 229 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed03g1691 423 MobiDBLite consensus disorder prediction 35 52 - -
Sed03g1691 423 SUPERFAMILY Winged helix DNA-binding domain 164 227 IPR036390 -
Sed03g1691 423 Pfam E2F transcription factor CC-MB domain 245 344 IPR032198 GO:0046983(InterPro)
Sed03g1691 423 Gene3D - 236 347 - -
Sed03g1691 423 MobiDBLite consensus disorder prediction 32 75 - -
Sed03g1691 423 CDD E2F_DD 240 347 IPR032198 GO:0046983(InterPro)
Sed03g1691 423 PANTHER TRANSCRIPTION FACTOR E2F 81 417 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Sed03g1691 423 Gene3D - 159 231 IPR036388 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1691 Sed-Chr3:10982597 Sed14g0279 Sed-Chr14:2893542 1.20E-54 dispersed
Sed03g1691 Sed-Chr3:10982597 Sed01g3208 Sed-Chr1:58598748 6.30E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37880 PF16421 E2F_CC-MB 7.60E-27 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1691 K06620 - csv:101211469 576.63