Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1691 ATGTCAAACGCCGTCGAAGATCTCCTCCTCCGCCACCGCCACCGCCACCGCCACTCCGATTTCCGATTCCAACTCCTTCATTCCCGCTCTCACCGCCGCTGCGACATGTCCTCCTCCTCGTCTTCTTCTTCTTCTTCTTCTGCGGCGGCTCAACCGATTCCCATGCCCTTCCCTCAGCATCATCGGCCGTCTCCGCCGTCGGATCAATCCAACGCTTGCGACGGCCGTCTCGCTCCCGAGGCACATTCCACTGCCGCTACGCTCTACCTGAAACGAACATATAATATTAATGATGACTCTGAGGCGTTGGCTAGTAAACTAGCTGTAGCCTCTGCGCCGAGGATGCGACCAAATGATTCTTCTTGTGAACCAGTTTCCATTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCCAAGACTCAAAAATCAATAGATGAGCCTCTTGAGGGTCCTAATCTATCTACTAACGGTCGGTACGATAGCTCTTTAGGCTTCTTGACAAAAAAATTTACAAGATTAATTCAGAGCGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTTGAAGGGATAGGGCTTATTGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGTGAAAGGCGTGGGCCTCAAGAGCTCAACGATCAAGTTCGTACATTAAAGGCTGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTTGATGAACTTATAAGAATGAAGCAAGAACATTTGAGACATCTCGAGGAAAATGCAAATCACAGAAAGAACCTTTTTATAACTGAAGAAGACATCTTGCAAATTCCTCGCTTTAAGAATCAGACACTTATAGCAGTTAAAGCTCCCCAAGCTAGCTTTATCGAAGTGCCCGATCCGGATGAGGAAGCTTGTTTTTCTGAGAGACAGTGTAGACTGATCATCAAAAGTACTACTGGGCCAATTGATGTGTACCTTTTGAGGACTGAAAAACAAGAGCTGGAAGAAAGTAGTTCCAAGCAAGCTAAAGTGTCTTTTGAACTGCAGAAGAATCATAAGATGTCTACCAACAACAACAATGCTCGTTGTCCTCCTTTCCAGGAGGATCATGGAATGCAGAGAATTTTACCTTTACATAACAATATAGATGATGATTATTGGTTTGAATCAAATTCTCAAGTGAGTAATTCGCATTTATGGGGTGAGGGACACAACTTTTGA 1272 43.4 MSNAVEDLLLRHRHRHRHSDFRFQLLHSRSHRRCDMSSSSSSSSSSSAAAQPIPMPFPQHHRPSPPSDQSNACDGRLAPEAHSTAATLYLKRTYNINDDSEALASKLAVASAPRMRPNDSSCEPVSIANEKQNKKLKLQKNSKSKTQKSIDEPLEGPNLSTNGRYDSSLGFLTKKFTRLIQSAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVRTLKAEVKSLYADERRLDELIRMKQEHLRHLEENANHRKNLFITEEDILQIPRFKNQTLIAVKAPQASFIEVPDPDEEACFSERQCRLIIKSTTGPIDVYLLRTEKQELEESSSKQAKVSFELQKNHKMSTNNNNARCPPFQEDHGMQRILPLHNNIDDDYWFESNSQVSNSHLWGEGHNF 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10982597 10987808 + Sed0004897.1 Sed03g1691 707178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1691 423 MobiDBLite consensus disorder prediction 109 163 - -
Sed03g1691 423 FunFam E2F transcription factor 1 158 231 - -
Sed03g1691 423 SUPERFAMILY E2F-DP heterodimerization region 240 345 IPR037241 -
Sed03g1691 423 Pfam E2F/DP family winged-helix DNA-binding domain 166 229 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed03g1691 423 SMART E2F_TDP_2 164 229 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed03g1691 423 MobiDBLite consensus disorder prediction 35 52 - -
Sed03g1691 423 SUPERFAMILY Winged helix DNA-binding domain 164 227 IPR036390 -
Sed03g1691 423 Pfam E2F transcription factor CC-MB domain 245 344 IPR032198 GO:0046983(InterPro)
Sed03g1691 423 Gene3D - 236 347 - -
Sed03g1691 423 MobiDBLite consensus disorder prediction 32 75 - -
Sed03g1691 423 CDD E2F_DD 240 347 IPR032198 GO:0046983(InterPro)
Sed03g1691 423 PANTHER TRANSCRIPTION FACTOR E2F 81 417 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Sed03g1691 423 Gene3D - 159 231 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1691 K06620 - - csv:101211469 576.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1691 Sed-Chr3:10982597 Sed14g0279 Sed-Chr14:2893542 1.20E-54 dispersed
Sed03g1691 Sed-Chr3:10982597 Sed01g3208 Sed-Chr1:58598748 6.30E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g2542 . 3 374 E2F-DP Transcription Factor Family AT3G48160 54.4 4.2e-102 369.4
Sed01g1687 . 3 366 E2F-DP Transcription Factor Family AT3G48160 55.5 1.4e-100 364.4
Sed08g2541 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed08g2543 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed07g1209 . 79 282 E2F-DP Transcription Factor Family AT5G02470 54.6 3.2e-59 226.5
Sed13g0318 . 79 284 E2F-DP Transcription Factor Family AT5G02470 54.1 1.0e-57 221.5
Sed01g3208 . 17 429 E2F-DP Transcription Factor Family AT2G36010 54.8 6.8e-115 412.1
Sed14g0279 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0280 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0281 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed01g3208 . 9 422 E2F-DP Transcription Factor Family AT5G22220 56.5 3.7e-110 396.4
Sed03g1691 . 164 353 E2F-DP Transcription Factor Family AT5G22220 57.4 9.3e-53 205.7
Sed03g1691 . 160 417 E2F-DP Transcription Factor Family AT1G47870 54.3 7.4e-67 252.3
Sed07g1209 . 79 282 E2F-DP Transcription Factor Family AT5G02470 54.6 3.2e-59 226.5
Sed13g0318 . 79 284 E2F-DP Transcription Factor Family AT5G02470 54.1 1.0e-57 221.5
Sed01g3208 . 9 422 E2F-DP Transcription Factor Family AT5G22220 56.5 3.7e-110 396.4
Sed03g1691 . 164 353 E2F-DP Transcription Factor Family AT5G22220 57.4 9.3e-53 205.7
Sed01g3208 . 17 429 E2F-DP Transcription Factor Family AT2G36010 54.8 6.8e-115 412.1
Sed14g0279 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0280 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0281 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed03g1691 . 160 417 E2F-DP Transcription Factor Family AT1G47870 54.3 7.4e-67 252.3
Sed08g2542 . 3 374 E2F-DP Transcription Factor Family AT3G48160 54.4 4.2e-102 369.4
Sed01g1687 . 3 366 E2F-DP Transcription Factor Family AT3G48160 55.5 1.4e-100 364.4
Sed08g2541 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed08g2543 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37880 PF16421 E2F_CC-MB 7.60E-27 No_clan Sed TF