Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1705 ATGTCGACGCCCTTCAGCGGCGATGAAACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCTGCGGCTCTCGTCTTCTCCTGTATGGGAGCTGCTTACGGGACGGCGAAGAGCGGGGTGGGAGTTGCGTCTATGGGAGTAATGAGGCCTGAGTTGGTTATGAAGTCGATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTGATTATCAGTACAGGGATTAACCCTAAGGCGAAGTCTTATTATCTCTTCGATGGCTACGCGCATCTTTCCTCTGGCCTTGCCTGTGGCCTTGCTGGTCTGTCCGCTGGTATGGCGATTGGGGTCGTCGGCGATGCTGGTGTCAGAGCCAACGCACAGCAGCCAAAGCTTTTCGTCGGAATGATTCTTATTTTAATTTTTGCGGAAGCGCTGGCTCTCTATGGACTTATTGTTGGCATTATTCTCTCTTCCCGAGCTGGCCAGTCGAGAGCTGAGTAA 498 53.01 MSTPFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGVVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11103752 11108097 + Sed0009352.1 Sed03g1705 707192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1705 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Sed03g1705 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Sed03g1705 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Sed03g1705 165 FunFam V-type proton ATPase proteolipid subunit 11 162 - -
Sed03g1705 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Sed03g1705 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Sed03g1705 165 Gene3D - 11 162 IPR035921 -
Sed03g1705 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 159 - GO:0016021(PANTHER)
Sed03g1705 165 NCBIfam V-type ATPase subunit C 13 121 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed03g1705 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Sed03g1705 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed03g1705 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed03g1705 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed03g1705 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1705 Sed-Chr3:11103752 Sed04g0491 Sed-Chr4:3615657 4.00E-75 dispersed
Sed03g1704 Sed-Chr3:11099262 Sed03g1705 Sed-Chr3:11103752 8.90E-75 tandem
Sed03g1705 Sed-Chr3:11103752 Sed03g1706 Sed-Chr3:11109719 2.30E-70 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1705 K02155 - cit:102607521 284.648