Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1706 ATGGCGTCAACATTCAACGGCGATGAAACGGCACCGTTTTTCGGCTTTCTCGGCGCCGCTGCGGCCCTGGTTTTCGCCTGTATGGGAGCCGCTTACGGGACGGCGAAGAGCGGCGTCGGAGTGGCGTCCATGGGAGTGATGAAGCCGGAATTGGTGATGAAATCGATTGTTCCGGTGGTTATGGCCGGAGTTTTGGGGATTTATGGTTTGATTATTGCTGTGATTATTAGTACAGGGATTAACCCTAAGGCTAAACCCTATTACCTCTTCGATGGCTTCGCTCATCTCTCCGGTGGTCTTTCTTGTGGCCTCGCTTCTCTCGCTTCCGGCATGACTATCGGCATCGTCGGCGATGTCGGCGTTAGGGCCAATGCACAACAACCTAAACTTTTTGTTGGGATGATTCTGATTCTGATTTTCGCGGAAGCACTAGCCCTTTATGGACTTATTGTTGGTATTATTCTCTCATCGCGAGCCGGTCAGTCGAGAGCTTAA 495 51.52 MASTFNGDETAPFFGFLGAAAALVFACMGAAYGTAKSGVGVASMGVMKPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGFAHLSGGLSCGLASLASGMTIGIVGDVGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11109719 11111347 + Sed0005913.1 Sed03g1706 707193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1706 164 Gene3D - 11 162 IPR035921 -
Sed03g1706 164 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Sed03g1706 164 NCBIfam V-type ATPase subunit C 13 121 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed03g1706 164 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Sed03g1706 164 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Sed03g1706 164 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Sed03g1706 164 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Sed03g1706 164 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Sed03g1706 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed03g1706 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed03g1706 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed03g1706 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed03g1706 164 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 159 - GO:0016021(PANTHER)
Sed03g1706 164 FunFam V-type proton ATPase proteolipid subunit 11 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1706 Sed-Chr3:11109719 Sed11g1074 Sed-Chr11:26208015 5.90E-71 dispersed
Sed03g1705 Sed-Chr3:11103752 Sed03g1706 Sed-Chr3:11109719 2.30E-70 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1706 K02155 - zma:100282817 260.381