Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1716 ATGAAGGTTCAGTGCGATGTCTGTGAAAACGGTGACGCGTCGGTGTTCTGCACCGCTGACGAGGCGGCGCTCTGTAATCTCTGCGATCACCGCGTCCACCACGCCAACAAGCTCGCTTCCAAGCACCGCCGCTTCTCTCTCCTCCGCCCTGATGCGGCGGCGCCCCCTGTCTGCGATGTCTGCCGGGAGCGGCGAGGATTCTTGTTTTGTCAGCAGGATAGAGCGATTCTGTGTAGAGAGTGCGATGATTCAATTCATTCGGCTAATGAACTCACCATGAAGCACGATAGGTTTCTTCTGACTGGGATTAAGCTTTCCGCCACCGCTGCTCTGTACGCACCGCCGCCGTCCGACGAGAAACCGACCGGAACTGGTGGTCGGGTTGGTTCTGATCTCAAGTCAAAGGGGTTAGTCAAGAAGGCAGCTGCTGTTTCTGCTGGCGCAATAGGATACACACAAGGTGTTTGCGTTAACGCCTCAACGAACTCACCGCCGGCAAACGCCGTGGATAAGGGCGGCAGAGGTCAGATTCCGACCGGGGGCGGTGGCACGGCCAGTAGCATATCGGAATATTTGATGGAGACGCTTCCTGGGTGGCACTTTGAAGACTTTCTTGATTCATCTGTTCCTCCCCCTTTTCTGGAGTGTGAAGGAATTGGGTTGCCATTTGAGGAAGGTGATTTCAATTGTGGGTTTTCAGCATTGGAACGTTTGGAGCTTTGGGTCCCTCAGGGACCACAGCCGACGGTGTATGGTTCAGGATTAATGATAAACAATGGACTTAAAGACACAAAGGATTTGGTACTTAACTCATCAAAAGTCAATAGAATATGGACAGATGATGCTTTCACTGTGCCACAGATTACAAGTACAACAAGTCCATCTGCTGGTTTTAAGAGATCCAGACCCATCTGA 915 52.13 MKVQCDVCENGDASVFCTADEAALCNLCDHRVHHANKLASKHRRFSLLRPDAAAPPVCDVCRERRGFLFCQQDRAILCRECDDSIHSANELTMKHDRFLLTGIKLSATAALYAPPPSDEKPTGTGGRVGSDLKSKGLVKKAAAVSAGAIGYTQGVCVNASTNSPPANAVDKGGRGQIPTGGGGTASSISEYLMETLPGWHFEDFLDSSVPPPFLECEGIGLPFEEGDFNCGFSALERLELWVPQGPQPTVYGSGLMINNGLKDTKDLVLNSSKVNRIWTDDAFTVPQITSTTSPSAGFKRSRPI 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11151192 11152925 - Sed0005096.1 Sed03g1716 707203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1716 304 MobiDBLite consensus disorder prediction 112 131 - -
Sed03g1716 304 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Sed03g1716 304 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Sed03g1716 304 CDD Bbox1_BBX-like 5 47 IPR049808 -
Sed03g1716 304 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Sed03g1716 304 FunFam B-box zinc finger protein 21 1 98 - -
Sed03g1716 304 CDD Bbox1_BBX-like 57 100 IPR049808 -
Sed03g1716 304 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 293 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Sed03g1716 304 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Sed03g1716 304 Gene3D Classic Zinc Finger 1 94 - -
Sed03g1716 304 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1716 Sed-Chr3:11151192 Sed05g3539 Sed-Chr5:44017457 1.50E-43 dispersed
Sed03g1716 Sed-Chr3:11151192 Sed03g1717 Sed-Chr3:11151192 9.30E-179 tandem
Sed01g2510 Sed-Chr1:18817266 Sed03g1716 Sed-Chr3:11151192 4.90E-32 wgd
Sed11g1069 Sed-Chr11:26168050 Sed03g1716 Sed-Chr3:11151192 7.00E-134 wgd
Sed03g1716 Sed-Chr3:11151192 Sed04g3907 Sed-Chr4:47225247 5.50E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37886 PF00643 zf-B_box 6.00E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1716 - - - 0.0