Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1717 ATGAAGGTTCAGTGCGATGTCTGTGAAAACGGTGACGCGTCGGTGTTCTGCACCGCTGACGAGGCGGCGCTCTGTAATCTCTGCGATCACCGCGTCCACCACGCCAACAAGCTCGCTTCCAAGCACCGCCGCTTCTCTCTCCTCCGCCCTGATGCGGCGGCGCCCCCTGTCTGCGATGTCTGCCGGGAGCGGCGAGGATTCTTGTTTTGTCAGCAGGATAGAGCGATTCTGTGTAGAGAGTGCGATGATTCAATTCATTCGGCTAATGAACTCACCATGAAGCACGATAGGTTTCTTCTGACTGGGATTAAGCTTTCCGCCACCGCTGCTCTGTACGCACCGCCGCCGTCCGACGAGAAACCGACCGGAACTGGTGGTCGGGTTGGTTCTGATCTCAAGTCAAAGGGGTTAGTCAAGAAGGCAGCTGCTGTTTCTGCTGGCGCAATAGGATACACACAAGGTGTTTGCGTTAACGCCTCAACGAACTCACCGCCGGCAAACGCCGTGGATAAGGGCGGCAGAGGTCAGATTCCGACCGGGGGCGGTGGCACGGCCAGTAGCATATCGGAATATTTGATGGAGACGCTTCCTGGGTGGCACTTTGAAGACTTTCTTGATTCATCTGTTCCTCCCCCTTTTCTGGAGTGTGAAGGAATTGGGTTGCCATTTGAGGAAGGTGATTTCAATTGTGGGTTTTCAGCATTGGAACGTTTGGAGCTTTGGGTCCCTCAGGGACCACAGCCGACGGTGTATGGTTCAGGATTAATGATAAACAATGGACTTAAAGACACAAAGGATTTGGTACTTAACTCATCAAAAGTCAATAGAATATGGACAGATGATGCTTTCACTGTGCCACAGATTACAAGTACAACAAGTCCATCTGCTGGTTTTAAGAGATCCAGACCCATCTGGTATAACCAAAACTGA 930 51.83 MKVQCDVCENGDASVFCTADEAALCNLCDHRVHHANKLASKHRRFSLLRPDAAAPPVCDVCRERRGFLFCQQDRAILCRECDDSIHSANELTMKHDRFLLTGIKLSATAALYAPPPSDEKPTGTGGRVGSDLKSKGLVKKAAAVSAGAIGYTQGVCVNASTNSPPANAVDKGGRGQIPTGGGGTASSISEYLMETLPGWHFEDFLDSSVPPPFLECEGIGLPFEEGDFNCGFSALERLELWVPQGPQPTVYGSGLMINNGLKDTKDLVLNSSKVNRIWTDDAFTVPQITSTTSPSAGFKRSRPIWYNQN 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11151192 11152925 - Sed0005096.2 Sed03g1717 707204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1717 309 MobiDBLite consensus disorder prediction 112 131 - -
Sed03g1717 309 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 293 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Sed03g1717 309 FunFam B-box zinc finger protein 21 1 98 - -
Sed03g1717 309 Gene3D Classic Zinc Finger 1 94 - -
Sed03g1717 309 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Sed03g1717 309 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Sed03g1717 309 CDD Bbox1_BBX-like 5 47 IPR049808 -
Sed03g1717 309 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Sed03g1717 309 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270(InterPro)
Sed03g1717 309 CDD Bbox1_BBX-like 57 100 IPR049808 -
Sed03g1717 309 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2510 Sed-Chr1:18817266 Sed03g1717 Sed-Chr3:11151192 4.90E-32 dispersed
Sed03g1717 Sed-Chr3:11151192 Sed11g1069 Sed-Chr11:26168050 3.40E-136 dispersed
Sed03g1716 Sed-Chr3:11151192 Sed03g1717 Sed-Chr3:11151192 9.30E-179 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37887 PF00643 zf-B_box 6.20E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1717 - - - 0.0