Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1719 ATGGATCTATTGCGATCGGAGCCGATGCAGTTGGCGCAGCTGATCATTCCTAATGAATCGGCTCACCGGACGATTTCCTACCTCGGCGACCTCGGCCTCTTCCAATTCAACGATCTCAATGCATCTAGAAGCCCATTCCAGCGGACATATGCAGCTCAGATTAAAAGATGTGGGGAAATGGCTCGCAAGCTACGATTTTTCAGGGAACAAATGGAAAGGGCAGGTTTATCCTCATCGTCAATTTCTCTAGGGGCTCCTGATATTGAACTGGATATTTTGGAGGTTAAACTTAGAGAATTTGAGGCAGAGTTGTTAGAGATAAATGGCAACAACGAGAAGTTACAGCGCAATTATAGTGAGCTGTTAGAATATAAGCTTGTACTTCAGAAGGTTGGGGAGTTTTTCCATCAAGCTCAAAGCATTGCTGCAGCTCAGCAAAGAGAACTGGAATCCCATAAAATTGGGGAAGGATCGATTGACAGTCCATTATTATTGGAACAAGAAATGACAACGGATCCAACCAAACAAGTTAAACTAGGCTATATCAGTGGTCTAGTTCCCAGAGAAAAGTCAATGGCTTTTGAAAGGATTTTGTTTCGTGCAACTAGGGGCAATCTGTATCTGAGGCAAGCTGTGGTTGATGGTTCCGTCACTGATCCTGTTTCTGGGGAGAAGGCCGAGAAAAATGTGTTTGTCATATTTTATTCTGGAGAGAGAGCAAAGAATAAAATTCTGAAAATAAGCGAAGCTTTTGGTGCAAACCGTTATCCATTTACTGATGACTTGAGTAAACAACTTCAGATGATTACAGAGGTGTCCGGAAAACTCTCTGAATTGAAGACTACCATTGATATGGGGCAACAGCATCGAAGTAAACTCTTGCAGGCGATTGGCTATCAATATGAGAAGTGGAATCTTCTGGTAAAGAAGGAAAAGTCTGTTTTCCACACTTTGAATATGCTCAGTGTGGACGTCACGAAGAAATGCCTTGTAGGTGAAGGTTGGTGTCCTGTTTTTGCAACAAACCAGATTCAAAGTGTGATGCAGAAGGCCGCCTTTGACAGCAAATCACAAATTGAGGCTATCTTTCATGTTTTGCAAAAGAAGGAAGCACCTCCAACATTTTTCCGCACAAACAAATTTACTTCTTCCTTTCAAGAAATCGTGGATGCATATGGGGTTGCAAAGTATCAGGAAGCAAATCCCGGAGTCTACACGATTGTCACCTTCCCTTTCCTTTTTGCTGTAATGTTTGGTGATTGGGGCCATGGAATATGCTTGTTGCTGGCAACATTATATTTTATAGCAAGGGAGAAGAAATTTTCCAGCCAGAAACTTGGAGACATCATTGAAATGACTTTTGGGGGGCGTTATGTTATCATGTTGATGGCACTTTTCTCTATCTACACCGGCCTGATTTATAATGAATTCTTTTCTGTCCCATTTGAACTGTTTGGACCTTCTGCATATGATTGTCGCCAGGCTTCATGCAGGGATGCTACTACCATTGGTTTAATAAAGGTTCGTGACACGTATCCATTTGGTTTGGATCCGAAGTGGCATGGTACTCGAAGTGAGTTGCCTTTTCTCAACTCGTTGAAAATGAAGATGTCTATCCTACTGGGTGTAGCTCAAATGAATGTCGGAATTATTTTGAGCTACTTCAATGCGAAGTTCTTTGCAGAAAACATTAACATCTGGTACCAATTTGTTCCACAGATGATATTCTTGAACAGCTTATTTGGTTACCTTTCACTTCTCATAATCGTAAAATGGTGCTCTGGATCTCAAGCTGATCTGTATCACATAATGATATACATGTTCTTGAGTCCTGCTGAGGATTTGGGTGAAAATCAGCTTTTTCCAGGACAGCAGTTTCTTCAGCTTCTATTACTTCTGTCTGCCCTCATTGCTGTGCCATGGATGTTGTTTCCCAAGCCTTTTTTGTTGAAAAAGCAGCATGAAGAAAGGCACCTCGGTCAATCCTACACCCCACTTCATAGCGCAGATGAGAATCATGAAACGAAACAGCACCATGAGGAGTTTGAATTCAGCGAGGTCTTTGTGCACCAACTTATACATACCATAGAATTTGTACTCGGTGCAGTTTCTAACACAGCATCTTATCTTCGTCTATGGGCCCTCAGTCTAGCCCATTCGGAGTTGTCGAGTGTATTTTACGACAAGATTCTACTCCTAACTTGGGGGTTCAAAAGTTGGACCATCCGAATATTAGGAATAGCCGTGTTCATTTGTGCAACTGTTGGAGTTTTACTAATTATGGAAACTCTAAGCGCATTCCTGCACGCCTTGAGGCTCCACTGGGTAGAGTTTCAAAACAAATTCTATGCAGGAGATGGATACAAATTTTCCCCCTTTTCATTTTCTTCGCTTCAGGACGAGGACGAGTGA 2412 42.12 MDLLRSEPMQLAQLIIPNESAHRTISYLGDLGLFQFNDLNASRSPFQRTYAAQIKRCGEMARKLRFFREQMERAGLSSSSISLGAPDIELDILEVKLREFEAELLEINGNNEKLQRNYSELLEYKLVLQKVGEFFHQAQSIAAAQQRELESHKIGEGSIDSPLLLEQEMTTDPTKQVKLGYISGLVPREKSMAFERILFRATRGNLYLRQAVVDGSVTDPVSGEKAEKNVFVIFYSGERAKNKILKISEAFGANRYPFTDDLSKQLQMITEVSGKLSELKTTIDMGQQHRSKLLQAIGYQYEKWNLLVKKEKSVFHTLNMLSVDVTKKCLVGEGWCPVFATNQIQSVMQKAAFDSKSQIEAIFHVLQKKEAPPTFFRTNKFTSSFQEIVDAYGVAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATLYFIAREKKFSSQKLGDIIEMTFGGRYVIMLMALFSIYTGLIYNEFFSVPFELFGPSAYDCRQASCRDATTIGLIKVRDTYPFGLDPKWHGTRSELPFLNSLKMKMSILLGVAQMNVGIILSYFNAKFFAENINIWYQFVPQMIFLNSLFGYLSLLIIVKWCSGSQADLYHIMIYMFLSPAEDLGENQLFPGQQFLQLLLLLSALIAVPWMLFPKPFLLKKQHEERHLGQSYTPLHSADENHETKQHHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKILLLTWGFKSWTIRILGIAVFICATVGVLLIMETLSAFLHALRLHWVEFQNKFYAGDGYKFSPFSFSSLQDEDE 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11211976 11221477 + Sed0016676.1 Sed03g1719 707206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1719 803 Pfam V-type ATPase 116kDa subunit family 27 795 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed03g1719 803 Coils Coil 90 117 - -
Sed03g1719 803 PANTHER VACUOLAR PROTON ATPASES 1 801 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Sed03g1719 803 PIRSF ATP6V0A1 1 803 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0902 Sed-Chr1:6518136 Sed03g1719 Sed-Chr3:11211976 5.80E-300 dispersed
Sed03g1719 Sed-Chr3:11211976 Sed05g2301 Sed-Chr5:35519962 0.00E+00 dispersed
Sed03g1719 Sed-Chr3:11211976 Sed04g3911 Sed-Chr4:47262737 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1719 K02154 - csv:101209817 1371.68