Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1722 ATGGCGGACACCGGCCCAGTCTCCGACAAGAGAATGTTGTGCTCGATCCCCGAGAGGTTCCAGCTCCATGCTGCTATGTTGGCCTTGCAATTCGGCTATGCCGGGTTCCATGTCGTCTCGAGAGCTGCCCTCAATATGGGCATTAGCAAACTCGTCTTCCCCGTTTATCGAAACGTCATCGCTTTGCTCCTCCTCCTCCCTTTTGCATATTTCATTGAAAAGAAGGATAGGCCTGCCCTCACTCTCAACTTTGTCCTTCAGTTCTTTCTCCTTGCTCTTGTTGGAATTACAGCAAATCAAGGGTTTTACTTGTTGGGTTTGGACAATACTTCTCCAACCTTTGCTTCTGCCATTCAGAATTCTGTTCCTGCAATTACTTTTCTTATGGCTGCACTTCTAAGGATTGAACAAGTCCGACTAAACCGGAAAGACGGGATAGCGAAGGTGGTGGGGACTCTATGCTGCGTGGCCGGAGCGACCGTGATCACATTATACAAAGGGCCAACCATCTACAGCCCGGCCACGACCGCAACGGTGCAGGGAGCGGCGGAGATCACGACGGGGACGATGCTGATGGGGCCAGGAGCGTTTCCCTCGCTAGGCGACGCGAAGGGCAAAAGCTGGACTTTAGGCTGTGTTTACTTGATCGGCCACTGCTTGTCGTGGTCGGCGTGGCTGGTTCTACAAGCTCCGGTCCTCAAGAAGTACCCGGCTCGGCTCTCCGTCACCTCTTTCACTTGCTTCTTTGGCCTCATCCAGTTCCTAATCATCGCGGTCGCATTCGAGCGCGACGCTCAGGCCTGGCTCTTCCACTCCGGCGCTGAAGCCTTCAGCATTGTTTATGCTGGGGTGGTGGCTTCGGGGATAGCTTTTGCTGTACAGATATGGTGCATTGACAGAGGCGGCCCGGTTTTCGTTGCGGTCTACCAACCGGTTCAGACCTTCGTTGTTGCTCTCATGGCTTCCTTTGCTTTGGGTGAAGAGTTCTACTTGGGAGGGATCATAGGGGCGGTGCTGATTATATCAGGACTGTACTTTGTGCTGTGGGGCAAGAGCGAAGAAAAGAAGCACTTATTGGATAGGGCAGTGATCCAGTCCGCTCCAGACCACGGTAGCACCAGAACCAGCGGCCGCATCAAGCCGTCCCTCAACCAGCCTCTTCTCCATCCTACGGCTGAAAATGTGTGA 1188 53.62 MADTGPVSDKRMLCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALLLLLPFAYFIEKKDRPALTLNFVLQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAALLRIEQVRLNRKDGIAKVVGTLCCVAGATVITLYKGPTIYSPATTATVQGAAEITTGTMLMGPGAFPSLGDAKGKSWTLGCVYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSFTCFFGLIQFLIIAVAFERDAQAWLFHSGAEAFSIVYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVALMASFALGEEFYLGGIIGAVLIISGLYFVLWGKSEEKKHLLDRAVIQSAPDHGSTRTSGRIKPSLNQPLLHPTAENV 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11247621 11251652 + Sed0010570.1 Sed03g1722 707209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1722 395 MobiDBLite consensus disorder prediction 368 395 - -
Sed03g1722 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 254 352 - -
Sed03g1722 395 PANTHER WAT1-RELATED PROTEIN 24 360 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed03g1722 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
Sed03g1722 395 Pfam EamA-like transporter family 210 348 IPR000620 GO:0016020(InterPro)
Sed03g1722 395 Pfam EamA-like transporter family 27 163 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1722 Sed-Chr3:11247621 Sed11g0508 Sed-Chr11:4899445 9.90E-64 dispersed
Sed08g0381 Sed-Chr8:2303753 Sed03g1722 Sed-Chr3:11247621 1.20E-111 transposed
Sed11g1065 Sed-Chr11:26042393 Sed03g1722 Sed-Chr3:11247621 6.00E-202 wgd
Sed13g1605 Sed-Chr13:21247976 Sed03g1722 Sed-Chr3:11247621 1.10E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1722 - - - 0.0