Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1723 ATGAGATCGATGGGAGTGGGGGTGTTTGGCGACGGGTTTAGTGTTGTGGTGGTTGTTGCTTTTGTGGTTTTGGGGTTTGGGGTTTGTAATGGCGGACTCACCAGCGGGTTTGTGAGGAGTCCAGATGTGTCCATGGATATGCCTATGGATAGCGATGTGTTTCAGCCTCCTCTTGGTAGAAATGCCGCTCAACAGGTTCATATAACCCAAGGAGATGCTGAGGGTAAGAGTGTAATTATCTCTTGGGTTACACCAGAGAAACCAGGTTCAAACAAAGTGGTTTATTGGGCTGAAAACAGTCCAATTAGAAAGAAAGCTGAAGGCTCTGTTGTTACCTACAAGTACTACAACTATACATCTGGTTACATCCATCACTGCACTATTAAGAATTTAGAGTATGACACTAAATACTTCTACGTGGTTGGCTTTGGAAGTCTAACTCGAAGGTTTTGGTTTATAACCCCTCCTCCAATTGGCCCTGATGTGCCTTACACTTTTGGCCTTATAGGAGATCTTGGCCAAACATATGATTCCAATAAGACACTTACACATTATGATCAAAACCCAACAAAAGGAAAGGCTGTGCTGTTCCTTGGGGACTTGGCTTATGCAGACCGCTATCCGTTCCACGACAACAACCGGTGGGACGCGTGGGGGAGGTTCGTGGAACGAAGCGTGGCTTATCAACCTTGGATTTGGACTTCAGGGAATCATGAACTTGATTATGCTCCAGAGATTGGTGAAAATGAACCATATAAGCCTTTTTTGAATCGCTACCGTGTCCCATATAATCCAAAAGATGGCGCCTCTCCTCTTTGGTACTCCATTAAGAGAGCTTCTGCTCATATCATTGTCTTGTCCTCTTACTCATCTTATGTGAAAAGTAGTCCTCAATACAAATGGCTAGAGAAGGAGCTACAAAATGTAAACAGGGACCTGACTCCCTGGCTCATAGTTCTTATGCATAGTCCAATGTACAGCAGTTATGTTCACCATTACATGGAGGGAGAAAGCATGAGAGTGGTTTACGAGTCATGGTTCGTCAAGTATAAAGTCGATATCGTCTTAGCCGGTCATGTTCATGCCTACGAACGATCTGAACGAGTATCAAACATAGCATATGATCTTGTAAATGGGAAATGTTCTCCAATTCTGGACCAAGATGCTCCAGTTCATGTAACCATTGGAGATGGAGGAAACTCAGAAGGATTAGTAACAGAGATGACTCAACCACAACCAATCTACTCAGCTTACCGTGAAGCGAGCTTCGGGCATGGAATTCTGGACATAAAGAACAGAACTCATGCACAGTTTTCTTGGCATCGAAACCAAGATGCGTACTCTGTCGAAGCAGATTCGGTATGGCTGCACAATCGACAATGGATAGCGATGACAAAATTGGCACAATCTGCTGCAGCGAGTGGCCTTTCATCAGCAGCAGCCTGA 1446 44.54 MRSMGVGVFGDGFSVVVVVAFVVLGFGVCNGGLTSGFVRSPDVSMDMPMDSDVFQPPLGRNAAQQVHITQGDAEGKSVIISWVTPEKPGSNKVVYWAENSPIRKKAEGSVVTYKYYNYTSGYIHHCTIKNLEYDTKYFYVVGFGSLTRRFWFITPPPIGPDVPYTFGLIGDLGQTYDSNKTLTHYDQNPTKGKAVLFLGDLAYADRYPFHDNNRWDAWGRFVERSVAYQPWIWTSGNHELDYAPEIGENEPYKPFLNRYRVPYNPKDGASPLWYSIKRASAHIIVLSSYSSYVKSSPQYKWLEKELQNVNRDLTPWLIVLMHSPMYSSYVHHYMEGESMRVVYESWFVKYKVDIVLAGHVHAYERSERVSNIAYDLVNGKCSPILDQDAPVHVTIGDGGNSEGLVTEMTQPQPIYSAYREASFGHGILDIKNRTHAQFSWHRNQDAYSVEADSVWLHNRQWIAMTKLAQSAAASGLSSAAA 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11253979 11260761 + Sed0021083.1 Sed03g1723 707210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1723 481 Pfam Iron/zinc purple acid phosphatase-like protein C 389 448 IPR025733 -
Sed03g1723 481 CDD MPP_PAPs 160 458 IPR041792 -
Sed03g1723 481 SUPERFAMILY Metallo-dependent phosphatases 160 465 IPR029052 -
Sed03g1723 481 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 159 467 - -
Sed03g1723 481 PANTHER ACID PHOSPHATASE RELATED 17 460 IPR039331 GO:0003993(InterPro)
Sed03g1723 481 Pfam Purple acid Phosphatase, N-terminal domain 64 154 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Sed03g1723 481 Pfam Calcineurin-like phosphoesterase 165 363 IPR004843 GO:0016787(InterPro)
Sed03g1723 481 Gene3D - 159 468 IPR029052 -
Sed03g1723 481 SUPERFAMILY Purple acid phosphatase, N-terminal domain 44 156 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Sed03g1723 481 Gene3D - 62 157 - -
Sed03g1723 481 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 62 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1723 K22390 - - csv:101210805 776.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1723 Sed-Chr3:11253979 Sed10g0969 Sed-Chr10:7933984 6.90E-176 dispersed
Sed03g1723 Sed-Chr3:11253979 Sed04g3913 Sed-Chr4:47277490 2.20E-198 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g3 . Blo15g00679 Bda06g00991 . . . . Bma12g00550 . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 Sed03g1723 . . Bhi05g01788 Tan02g2021 Cmetu03g0999 . . . . . . . . . . . Cone12ag1169 Cone8ag1217 . . Lsi10g00400 . Chy11g00351 . . Blo13g00542 . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . Csa02g01291 . Cme11g00153
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97