Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1737 ATGGCTGATGCCAATTCCTCGTCGTCATCCTCTTCCTCTTTTTTGCACCCTCCAAAACAAGGTGGTGTCAGGTCAAAGTGTGAATACAAAATCAGGCGCAGCAATAACAATAGTGAACGCCCAATTTATCGGGGCGTTCGAATGAGGGTTTGGGGCAAATGGGTGTCGGAAATTCGGGAGCCAAAGAAGAAGAGCCGGATATGGCTAGGCACCTTCGCCACGCCTGAAATGGCGGCACGTGCTCATGATGTTGCTGCCCTTTCCATCAAAGGTAATTCTGCCATCCTCAATTTTCCCGAACTCGCCTCATCATTCCCTCGACCGGCCTCCTCGGCTCCTCGCGACATACAGTCTGCTGCCACCCTTGCCGCCTCAATGCAACTCCCTAACGTCCCTCCTCCACCATCGTCGATGTTCTCAACATTGTCTGAGTTGGATGATTCGACACATGAGGAACTAAGTAAAATTGTGGAGCTGCCGAGTTTAGGAACCAGTTATGAAGGATCGAGCAAATTGGAGACTGAGTTCGTGTGTAATGAGTGGTTATATAATTATAGGCCATGGTATCAAAATCAAAGCACAAGCGAAGAAGAAGAAGAAGCTTATGAGTACTTATAG 618 48.38 MADANSSSSSSSSFLHPPKQGGVRSKCEYKIRRSNNNSERPIYRGVRMRVWGKWVSEIREPKKKSRIWLGTFATPEMAARAHDVAALSIKGNSAILNFPELASSFPRPASSAPRDIQSAATLAASMQLPNVPPPPSSMFSTLSELDDSTHEELSKIVELPSLGTSYEGSSKLETEFVCNEWLYNYRPWYQNQSTSEEEEEAYEYL 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11366227 11367113 + Sed0028044.1 Sed03g1737 707224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1737 205 SMART rav1_2 42 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1737 205 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1737 205 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1737 205 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1737 205 Pfam AP2 domain 42 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1737 205 CDD AP2 41 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1737 205 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1737 205 MobiDBLite consensus disorder prediction 1 18 - -
Sed03g1737 205 MobiDBLite consensus disorder prediction 1 25 - -
Sed03g1737 205 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677(InterPro)
Sed03g1737 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 171 IPR051032 -
Sed03g1737 205 FunFam Ethylene-responsive transcription factor 2 41 100 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1737 Sed-Chr3:11366227 Sed12g1396 Sed-Chr12:11439726 1.70E-35 dispersed
Sed03g1737 Sed-Chr3:11366227 Sed03g1738 Sed-Chr3:11404912 7.20E-50 tandem
Sed11g0054 Sed-Chr11:512499 Sed03g1737 Sed-Chr3:11366227 8.30E-66 transposed
Sed12g1829 Sed-Chr12:29557891 Sed03g1737 Sed-Chr3:11366227 4.90E-41 wgd
Sed03g1737 Sed-Chr3:11366227 Sed08g0804 Sed-Chr8:6325078 3.20E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37889 PF00847 AP2 3.10E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1737 K09286 - csv:101212945 246.128