Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1751 ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTTTCCGTTCCTGCTCAAGAAACTTCAATCCGTTCTTTCTTGACTGCGAGTGGAACATTTCACGACGGTAATCTGCTATTGAACCAGAAAGGATTGCGGCTTAAATCCGAAGAGAAAGAAGCGCAGACTTCAGACTGTAAGGAGGTTGAAGTTGATTTCTCATTGGAGGATCTAGAGACTGTGAAAGTCATCGGCAAAGGAAGTGGCGGTGTCGTACAACTTGTTCGACACAAATGGATTGGAAAACTTTTTGCCTTAAAGGTCATCCAGATGAACATACAAGAGGATATCCGCAAACAGATAGTGCAAGAACTGAAAATAAACCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAATGGCGCCATATCTCTTGTGCTAGAGTACATGGAGCGGGGTTCTTTAGCCGATATTGTCAGACAAGTCAAAACAATTCTCGAACCGTATCTTGCAGTTGTTTGCAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTGGTGAACCATAAAGGGGATGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCCGAGCGAATTAGTGGGGGAACATATGACTACAGCAGTGATATATGGAGCTTAGGCCTGGTAGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCTTGGAGGCCATTGTAGCAAAGCCACCCCCTTCTGCTCCACCGGATCAATTTTCGCCCGAGTTCTGTTCATTCGTGTCTGCTTGCATTAAGAAGGACCCTAAAGAAAGATCATCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGACAAAGATATCGATCTCGGGATTCTTGTAGGCAGCTTGGATCCTCCTGTAAGTTTTCCAAGATAA 1065 42.91 MKTKTPLKQLKLSVPAQETSIRSFLTASGTFHDGNLLLNQKGLRLKSEEKEAQTSDCKEVEVDFSLEDLETVKVIGKGSGGVVQLVRHKWIGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMERGSLADIVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGDVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDLGILVGSLDPPVSFPR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11580944 11584043 - Sed0000890.1 Sed03g1751 707238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1751 354 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1751 354 Gene3D Phosphorylase Kinase; domain 1 37 148 - -
Sed03g1751 354 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
Sed03g1751 354 FunFam Mitogen-activated protein kinase kinase 6 150 348 - -
Sed03g1751 354 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1751 354 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 45 341 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Sed03g1751 354 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Sed03g1751 354 Gene3D Transferase(Phosphotransferase) domain 1 150 343 - -
Sed03g1751 354 SMART serkin_6 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1751 354 PIRSF ILK 2 326 - -
Sed03g1751 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g1751 354 CDD PKc_MAPKK_plant_like 67 333 - -
Sed03g1751 354 SUPERFAMILY Protein kinase-like (PK-like) 67 339 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1751 Sed-Chr3:11580944 Sed12g1735 Sed-Chr12:28490804 1.20E-124 dispersed
Sed03g1751 Sed-Chr3:11580944 Sed03g1752 Sed-Chr3:11580944 1.30E-128 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78902 PF00069 Pkinase 1.40E-66 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1751 K04368 - csv:101218848 674.085