Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1752 | ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTTTCCGTTCCTGCTCAAGAAACTTCAATCCGTTCTTTCTTGACTGCGAGTGGAACATTTCACGACGGTAATCTGCTATTGAACCAGAAAGGATTGCGGCTTAAATCCGAAGAGAAAGAAGCGCAGACTTCAGACTGTAAGGAGGTTGAAGTTGATTTCTCATTGGAGGATCTAGAGACTGTGAAAGTCATCGGCAAAGGAAGTGGCGGTGTCGTACAACTTGTTCGACACAAATGGATTGGAAAACTTTTTGCCTTAAAGGTCATCCAGATGAACATACAAGAGGATATCCGCAAACAGATAGTGCAAGAACTGAAAATAAACCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAATGGCGCCATATCTCTTGTGCTAGAGTACATGGAGCGGGGTTCTTTAGCCGATATTGTCAGACAAGTCAAAACAATTCTCGAACCGTATCTTGCAGTTGTTTGCAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTGGTGAACCATAAAGGGGATGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTAGGGACTTACAATTACATGTCGGTATGTGAAATACTTAATAGATTGATTTTATGCACTGTGTTTGATTTGATATGA | 756 | 41.14 | MKTKTPLKQLKLSVPAQETSIRSFLTASGTFHDGNLLLNQKGLRLKSEEKEAQTSDCKEVEVDFSLEDLETVKVIGKGSGGVVQLVRHKWIGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMERGSLADIVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGDVKITDFGVSAMLASSMGQRDTFVGTYNYMSVCEILNRLILCTVFDLI | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 11580944 | 11584043 | - | Sed0000890.2 | Sed03g1752 | 707239 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1752 | 251 | SMART | serkin_6 | 69 | 251 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g1752 | 251 | Gene3D | Phosphorylase Kinase; domain 1 | 37 | 148 | - | - | |
Sed03g1752 | 251 | Pfam | Protein kinase domain | 70 | 234 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g1752 | 251 | SUPERFAMILY | Protein kinase-like (PK-like) | 62 | 234 | IPR011009 | - | |
Sed03g1752 | 251 | FunFam | Mitogen-activated protein kinase kinase 6 | 39 | 148 | - | - | |
Sed03g1752 | 251 | ProSitePatterns | Protein kinases ATP-binding region signature. | 75 | 98 | IPR017441 | GO:0005524(InterPro) | |
Sed03g1752 | 251 | ProSiteProfiles | Protein kinase domain profile. | 69 | 251 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g1752 | 251 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 45 | 234 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) | |
Sed03g1752 | 251 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 187 | 199 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed03g1752 | 251 | Gene3D | Transferase(Phosphotransferase) domain 1 | 150 | 243 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1752 | Sed-Chr3:11580944 | Sed12g1735 | Sed-Chr12:28490804 | 1.70E-80 | dispersed | |
Sed03g1751 | Sed-Chr3:11580944 | Sed03g1752 | Sed-Chr3:11580944 | 1.30E-128 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78903 | PF00069 | Pkinase | 8.60E-44 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1752 | K04368 | - | csv:101218848 | 437.958 |