Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1753 ATGTCTTGGCAAACTTACGTCGATGATCATTTGATGTGCGACATTGAGGGAAATCACCTCACATCGGCGGCCATTATCGGCCAGGACGGCAGCGTTTGGGCTCAAAGCGCCGCTTTCCCTCAGTTCAAGCCTGAAGAAGTTATTGCCATCATGAAGGATTTCGAAGAACCCGGGACGCTTGCTCCAACTGGTTTGTACCTTGGTGGTGCAAAATATATGGTAATTCAAGGGGAGCCTGGTGCTGTGATTCGTGGGAAGAAGGGCCCAGGTGGAGTTACTGTTAAGAAGACTAATATGGCTCTAGTCATTGGCATCTATGATGAACCCATGACTCCTGGTCAGTGCAATATGATTGTTGAAAGGCTTGGGGATTATCTCGTCGACCAGGGTCTCTAA 396 48.74 MSWQTYVDDHLMCDIEGNHLTSAAIIGQDGSVWAQSAAFPQFKPEEVIAIMKDFEEPGTLAPTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTNMALVIGIYDEPMTPGQCNMIVERLGDYLVDQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11584945 11588002 - Sed0027231.1 Sed03g1753 707240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1753 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Sed03g1753 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Sed03g1753 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
Sed03g1753 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Sed03g1753 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Sed03g1753 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Sed03g1753 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Sed03g1753 131 Pfam Profilin 1 130 IPR048278 GO:0003779(InterPro)
Sed03g1753 131 CDD PROF 2 130 IPR005455 GO:0003779(InterPro)
Sed03g1753 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Sed03g1753 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Sed03g1753 131 FunFam Profilin 1 131 - -
Sed03g1753 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Sed03g1753 131 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Sed03g1753 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Sed03g1753 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Sed03g1753 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Sed03g1753 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Sed03g1753 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Sed03g1753 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
Sed03g1753 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1753 Sed-Chr3:11584945 Sed11g0036 Sed-Chr11:338165 1.30E-65 dispersed
Sed03g1753 Sed-Chr3:11584945 Sed03g1754 Sed-Chr3:11589063 4.90E-60 tandem
Sed11g0035 Sed-Chr11:334700 Sed03g1753 Sed-Chr3:11584945 1.60E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1753 K05759 - rcu:8265128 249.21