Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sed03g1754	ATGTCGTGGCAAACTTACGTTGATGATCATTTGATGTGCGACATTGATGGCCAGGGCCAGCACCTCACCGCCTCCGCCATTGTTGGCCACGATGGCAGCATCTGGGCTCAGAGCACCTCATTTCCTCAGTTCAAGCCTAATGAGATCACTGGTATCATGAAGGATTTCGATGAACCAGGTCATCTTGCGCCTACTGGGTTACACCTTGGAGGTACAAAGTATATGGTAATTCAAGGAGAGCCTGGAGCTGTCATCCGTGGAAAGAAGGGGTCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTTTTTGGCCTCTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTCGGCGATTACCTCGTCGATCAGGGTCTGTAG	402	50.0	MSWQTYVDDHLMCDIDGQGQHLTASAIVGHDGSIWAQSTSFPQFKPNEITGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGLYEEPVTPGQCNMVVERLGDYLVDQGL	133

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
3	11589063	11591509	-	Sed0022306.1	Sed03g1754	707241

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Sed03g1754	133	ProSitePatterns	Profilin signature.	1	8	IPR027310	GO:0003779(InterPro)
Sed03g1754	133	Pfam	Profilin	1	132	IPR048278	GO:0003779(InterPro)
Sed03g1754	133	SMART	prof_2	1	133	IPR005455	GO:0003779(InterPro)
Sed03g1754	133	SUPERFAMILY	Profilin (actin-binding protein)	2	132	IPR036140	-
Sed03g1754	133	CDD	PROF	2	132	IPR005455	GO:0003779(InterPro)
Sed03g1754	133	PANTHER	PROFILIN	1	132	IPR005455	GO:0003779(InterPro)\|GO:0003785(PANTHER)\|GO:0005938(PANTHER)\|GO:0042989(PANTHER)
Sed03g1754	133	PRINTS	Plant profilin signature	73	82	IPR005455	GO:0003779(InterPro)
Sed03g1754	133	PRINTS	Plant profilin signature	119	132	IPR005455	GO:0003779(InterPro)
Sed03g1754	133	PRINTS	Plant profilin signature	54	68	IPR005455	GO:0003779(InterPro)
Sed03g1754	133	PRINTS	Plant profilin signature	29	42	IPR005455	GO:0003779(InterPro)
Sed03g1754	133	PRINTS	Plant profilin signature	1	14	IPR005455	GO:0003779(InterPro)
Sed03g1754	133	PRINTS	Plant profilin signature	106	119	IPR005455	GO:0003779(InterPro)
Sed03g1754	133	PRINTS	Plant profilin signature	86	101	IPR005455	GO:0003779(InterPro)
Sed03g1754	133	PRINTS	Profilin signature	66	80	IPR005455	GO:0003779(InterPro)
Sed03g1754	133	PRINTS	Profilin signature	42	62	IPR005455	GO:0003779(InterPro)
Sed03g1754	133	PRINTS	Profilin signature	3	12	IPR005455	GO:0003779(InterPro)
Sed03g1754	133	PRINTS	Profilin signature	102	115	IPR005455	GO:0003779(InterPro)
Sed03g1754	133	PRINTS	Profilin signature	115	132	IPR005455	GO:0003779(InterPro)
Sed03g1754	133	PRINTS	Profilin signature	23	32	IPR005455	GO:0003779(InterPro)
Sed03g1754	133	Gene3D	Dynein light chain 2a, cytoplasmic	1	133	-	-
Sed03g1754	133	FunFam	Profilin	1	133	-	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sed03g1754	K05759	-	-	csv:101219322	257.684

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Sed03g1754	Sed-Chr3:11589063	Sed11g0035	Sed-Chr11:334700	1.60E-74	dispersed
	Sed03g1753	Sed-Chr3:11584945	Sed03g1754	Sed-Chr3:11589063	4.90E-60	tandem

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Sed02g0367	.	1	377	Cytoskeleton Gene Families	AT2G37620	96.0	1.9e-213	739.2
Sed07g2481	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.8	3.2e-213	738.4
Sed07g2482	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.8	3.2e-213	738.4
Sed10g0485	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	4.2e-213	738.0
Sed05g3846	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	4.2e-213	738.0
Sed04g2828	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	9.4e-213	736.9
Sed06g0331	.	1	377	Cytoskeleton Gene Families	AT2G37620	94.7	1.2e-212	736.5
Sed01g0035	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.2	1.2e-212	736.5
Sed03g0086	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	1.6e-212	736.1
Sed01g2744	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	2.1e-212	735.7
Sed10g1808	.	1	377	Cytoskeleton Gene Families	AT2G37620	94.4	3.6e-212	734.9
Sed12g1245	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	6.1e-212	734.2
Sed03g3008	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	8.0e-212	733.8
Sed14g0483	.	1	161	Cytoskeleton Gene Families	AT2G37620	90.2	3.6e-79	293.1
Sed14g0482	.	1	127	Cytoskeleton Gene Families	AT2G37620	99.2	8.9e-70	261.9
Sed01g2744	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.6	6.5e-214	740.7
Sed03g0086	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.6	1.9e-213	739.2
Sed12g1245	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.6	4.2e-213	738.0
Sed07g2481	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.3	9.4e-213	736.9
Sed07g2482	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.3	9.4e-213	736.9
Sed02g0367	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.3	1.6e-212	736.1
Sed04g2828	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.0	2.7e-212	735.3
Sed03g3008	.	1	377	Cytoskeleton Gene Families	AT5G59370	95.5	6.1e-212	734.2
Sed01g0035	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.7	2.6e-210	728.8
Sed06g0331	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.2	4.4e-210	728.0
Sed10g0485	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.4	5.7e-210	727.6
Sed05g3846	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.4	5.7e-210	727.6
Sed10g1808	.	1	377	Cytoskeleton Gene Families	AT5G59370	93.9	1.3e-209	726.5
Sed14g0483	.	1	161	Cytoskeleton Gene Families	AT5G59370	92.1	2.5e-80	297.0
Sed14g0482	.	1	127	Cytoskeleton Gene Families	AT5G59370	97.6	4.4e-69	259.6
Sed01g2744	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.8	2.9e-214	741.9
Sed03g0086	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.8	8.5e-214	740.3
Sed12g1245	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.8	1.9e-213	739.2
Sed07g2481	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.6	4.2e-213	738.0
Sed07g2482	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.6	4.2e-213	738.0
Sed02g0367	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.6	7.2e-213	737.3
Sed04g2828	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.3	1.2e-212	736.5
Sed03g3008	.	1	377	Cytoskeleton Gene Families	AT3G46520	95.8	2.7e-212	735.3
Sed06g0331	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.4	2.0e-210	729.2
Sed10g0485	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.7	2.6e-210	728.8
Sed05g3846	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.7	2.6e-210	728.8
Sed10g1808	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.2	5.7e-210	727.6
Sed01g0035	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.4	7.5e-210	727.2
Sed14g0483	.	1	161	Cytoskeleton Gene Families	AT3G46520	92.7	1.1e-80	298.1
Sed14g0482	.	1	127	Cytoskeleton Gene Families	AT3G46520	97.6	4.4e-69	259.6
Sed04g2828	.	1	377	Cytoskeleton Gene Families	AT3G12110	97.1	7.7e-215	743.8
Sed02g0367	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.8	1.3e-214	743.0
Sed07g2481	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.8	1.7e-214	742.7
Sed07g2482	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.8	1.7e-214	742.7
Sed03g0086	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.3	1.1e-213	740.0
Sed01g2744	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.8	3.2e-213	738.4
Sed12g1245	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.3	4.2e-213	738.0
Sed10g0485	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.5	1.6e-212	736.1
Sed05g3846	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.5	1.6e-212	736.1
Sed06g0331	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.2	2.1e-212	735.7
Sed03g3008	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.8	2.7e-212	735.3
Sed01g0035	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.2	4.7e-212	734.6
Sed10g1808	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.0	6.1e-212	734.2
Sed14g0483	.	1	161	Cytoskeleton Gene Families	AT3G12110	90.9	5.6e-80	295.8
Sed14g0482	.	1	127	Cytoskeleton Gene Families	AT3G12110	98.4	2.0e-69	260.8
Sed10g0485	.	1	377	Cytoskeleton Gene Families	AT3G18780	93.1	8.3e-209	723.8
Sed05g3846	.	1	377	Cytoskeleton Gene Families	AT3G18780	93.1	8.3e-209	723.8
Sed01g0035	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.8	2.4e-208	722.2
Sed06g0331	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.6	4.1e-208	721.5
Sed03g0086	.	1	377	Cytoskeleton Gene Families	AT3G18780	91.8	9.1e-208	720.3
Sed07g2481	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.0	9.1e-208	720.3
Sed07g2482	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.0	9.1e-208	720.3
Sed10g1808	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.3	1.2e-207	719.9
Sed01g2744	.	1	377	Cytoskeleton Gene Families	AT3G18780	91.5	1.6e-207	719.5
Sed04g2828	.	1	377	Cytoskeleton Gene Families	AT3G18780	91.8	2.7e-207	718.8
Sed02g0367	.	1	377	Cytoskeleton Gene Families	AT3G18780	91.5	4.5e-207	718.0
Sed12g1245	.	1	377	Cytoskeleton Gene Families	AT3G18780	91.2	1.0e-206	716.8
Sed03g3008	.	1	377	Cytoskeleton Gene Families	AT3G18780	91.2	1.7e-206	716.1
Sed14g0483	.	1	161	Cytoskeleton Gene Families	AT3G18780	87.8	1.4e-78	291.2
Sed14g0482	.	1	127	Cytoskeleton Gene Families	AT3G18780	94.5	8.3e-68	255.4
Sed10g0485	.	1	377	Cytoskeleton Gene Families	AT1G49240	93.4	2.8e-209	725.3
Sed05g3846	.	1	377	Cytoskeleton Gene Families	AT1G49240	93.4	2.8e-209	725.3
Sed01g0035	.	1	377	Cytoskeleton Gene Families	AT1G49240	93.1	8.3e-209	723.8
Sed06g0331	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.8	1.4e-208	723.0
Sed03g0086	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.0	3.1e-208	721.8
Sed07g2481	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.3	3.1e-208	721.8
Sed07g2482	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.3	3.1e-208	721.8
Sed10g1808	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.6	4.1e-208	721.5
Sed01g2744	.	1	377	Cytoskeleton Gene Families	AT1G49240	91.8	5.3e-208	721.1
Sed04g2828	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.0	9.1e-208	720.3
Sed02g0367	.	1	377	Cytoskeleton Gene Families	AT1G49240	91.8	1.6e-207	719.5
Sed12g1245	.	1	377	Cytoskeleton Gene Families	AT1G49240	91.5	3.5e-207	718.4
Sed03g3008	.	1	377	Cytoskeleton Gene Families	AT1G49240	91.5	5.9e-207	717.6
Sed14g0483	.	1	161	Cytoskeleton Gene Families	AT1G49240	87.8	1.4e-78	291.2
Sed14g0482	.	1	127	Cytoskeleton Gene Families	AT1G49240	94.5	8.3e-68	255.4
Sed10g0485	.	1	377	Cytoskeleton Gene Families	AT5G09810	98.4	1.4e-216	749.6
Sed05g3846	.	1	377	Cytoskeleton Gene Families	AT5G09810	98.4	1.4e-216	749.6
Sed01g0035	.	1	377	Cytoskeleton Gene Families	AT5G09810	98.1	4.1e-216	748.0
Sed10g1808	.	1	377	Cytoskeleton Gene Families	AT5G09810	96.3	6.5e-214	740.7
Sed06g0331	.	1	377	Cytoskeleton Gene Families	AT5G09810	96.0	1.5e-213	739.6
Sed07g2481	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.8	1.2e-212	736.5
Sed07g2482	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.8	1.2e-212	736.5
Sed02g0367	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.8	1.6e-212	736.1
Sed03g0086	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.8	2.1e-212	735.7
Sed04g2828	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.5	3.6e-212	734.9
Sed01g2744	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.2	6.1e-212	734.2
Sed12g1245	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.2	5.2e-211	731.1
Sed03g3008	.	1	377	Cytoskeleton Gene Families	AT5G09810	94.4	3.4e-210	728.4
Sed14g0483	.	1	161	Cytoskeleton Gene Families	AT5G09810	90.2	3.6e-79	293.1
Sed14g0482	.	1	127	Cytoskeleton Gene Families	AT5G09810	98.4	2.6e-69	260.4
Sed03g1753	.	1	131	Cytoskeleton Gene Families	AT2G19760	80.2	2.2e-60	229.2
Sed11g0036	.	1	131	Cytoskeleton Gene Families	AT2G19760	78.6	4.6e-58	221.5
Sed11g0035	.	1	133	Cytoskeleton Gene Families	AT2G19760	75.2	7.4e-56	214.2
Sed03g1754	.	1	133	Cytoskeleton Gene Families	AT2G19760	75.2	1.3e-55	213.4
Sed07g1414	.	1	131	Cytoskeleton Gene Families	AT2G19760	71.8	9.1e-54	207.2
Sed06g2183	.	1	131	Cytoskeleton Gene Families	AT2G19760	71.8	7.7e-53	204.1
Sed03g1753	.	1	131	Cytoskeleton Gene Families	AT4G29350	78.6	5.5e-59	224.6
Sed11g0036	.	1	131	Cytoskeleton Gene Families	AT4G29350	78.6	3.0e-57	218.8
Sed11g0035	.	1	133	Cytoskeleton Gene Families	AT4G29350	75.2	7.4e-56	214.2
Sed03g1754	.	1	133	Cytoskeleton Gene Families	AT4G29350	73.7	4.8e-55	211.5
Sed07g1414	.	1	131	Cytoskeleton Gene Families	AT4G29350	73.3	5.3e-54	208.0
Sed06g2183	.	1	131	Cytoskeleton Gene Families	AT4G29350	71.0	2.2e-52	202.6
Sed11g0036	.	1	87	Cytoskeleton Gene Families	AT5G56600	79.3	2.9e-37	152.1
Sed03g1754	.	1	133	Cytoskeleton Gene Families	AT4G29340	82.8	2.2e-63	239.2
Sed11g0035	.	1	133	Cytoskeleton Gene Families	AT4G29340	82.8	2.2e-63	239.2
Sed07g1414	.	1	131	Cytoskeleton Gene Families	AT4G29340	73.9	9.0e-57	217.2
Sed03g1753	.	1	131	Cytoskeleton Gene Families	AT4G29340	74.6	1.2e-56	216.9
Sed11g0036	.	1	131	Cytoskeleton Gene Families	AT4G29340	72.4	1.7e-55	213.0
Sed06g2183	.	1	131	Cytoskeleton Gene Families	AT4G29340	70.1	7.9e-53	204.1

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0000501	4	6	1	4	4	2	6	4	2	3	2	1	3	3	3	6	2	7	7	3	3	3	2	4	5	5	3	6	4	4	112