Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1757 ATGAAGATCGTGGAATTGGATGATGCTGGGACTGATCGGGATGAAGAAATCGGTGGTTCTCAGATCGTGAAGGTGGATGCCAAAAGGGCGTTGGTTGGGGCTGGGGCTCGAATCTTGTTTTACCCTACCCTTTTGTATAACGTGCTTCGGAATAAAATGGAAGCTGAATTCAGATGGTGGGATGAAGTTGATCAGTTTCTTTTGCTGGGTGCAGTGCCCTTCCCTAAAGATGTCCCAAGATTGAAGAAGCTTGGTGTTGGCGGTGTTATCACTCTCAATGAACCTTATGAAACATTAGTTCCATCTTCCTTATATTATCGCCATGGAATTGATCACTTAAAGATCCCCACGAGAGATTATTGTTTTGCTCCTAAATTTTCTGATATTAGCCGAGCTGTAGACTTTATTCACAGTAATGCATTGTGTGGTAAAACAACATACGTTCATTGTAAAGCAGGACGAGGAAGGAGCACGACCATTGTGCTTTGCTATTTGGTAAAGTATAAGCACATGACCCCATCTGCTGCCCTGGAATACGTGCGCTCTAGAAGACCACGAGTGTTGCTCGCCCCCTCGCAGTGGGAGGCTGTTCAAGAATATAGCAGTCGCCGGCCCGTAACAAGTTCAAGCTCACCCTCAGGAGGAGATGCAGTCCTCATTACAAAAGACGATCTTGAAGGATACCACGGTACATGCATCGACAGTGCAGGTAGAGAACTTGCCGTTGTCCCGAGGATGGGTAAGTCAAAGCCAATGATAGCAAGGTTGTCCTGCCTGTTTTCCTCTTTGATAGTTCATGGTAGTAGTGGATCGCTCATTAAGCGTCTGCCGGTGTCGGAGGCTCGTGCTTGTTGA 855 46.67 MKIVELDDAGTDRDEEIGGSQIVKVDAKRALVGAGARILFYPTLLYNVLRNKMEAEFRWWDEVDQFLLLGAVPFPKDVPRLKKLGVGGVITLNEPYETLVPSSLYYRHGIDHLKIPTRDYCFAPKFSDISRAVDFIHSNALCGKTTYVHCKAGRGRSTTIVLCYLVKYKHMTPSAALEYVRSRRPRVLLAPSQWEAVQEYSSRRPVTSSSSPSGGDAVLITKDDLEGYHGTCIDSAGRELAVVPRMGKSKPMIARLSCLFSSLIVHGSSGSLIKRLPVSEARAC 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11619312 11622419 + Sed0011864.1 Sed03g1757 707244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1757 284 Gene3D Protein tyrosine phosphatase superfamily 59 205 IPR029021 -
Sed03g1757 284 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470(InterPro)
Sed03g1757 284 CDD PTPMT1 59 203 IPR044596 GO:0004721(InterPro)
Sed03g1757 284 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 3 256 - -
Sed03g1757 284 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311(InterPro)
Sed03g1757 284 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311(InterPro)
Sed03g1757 284 Pfam Dual specificity phosphatase, catalytic domain 99 201 IPR000340 GO:0016311(InterPro)
Sed03g1757 284 SMART dsp_5 62 203 IPR020422 GO:0006470(InterPro)
Sed03g1757 284 FunFam Dual specificity phosphatase domain protein 59 206 - -
Sed03g1757 284 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 201 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1757 Sed-Chr3:11619312 Sed04g1684 Sed-Chr4:31524681 6.40E-81 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1757 - - - 0.0