Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1772 ATGATGATCGGCGAGCAAACCAAGCGATCTAAACCGACGCTTCATATTACTACCTGGACGTTCATGGACGATACGCCATCGGATTTGTACGGTCATTCGCCGGAGAGCGGCAGCAGCGGCGGCGACGGCGGTGTCAAATGCGACGGTTGTTCCACCGGAGGTGGAGTCTCTTATTATCTCCAGAAAGCGTTTGCGTTGATGCATCCTTACTCGACGGAGGCGGATTTTGATTGTGACGTTTCAGATCGGGAGGCGGAATCTCCGGCGGAAACGTACTCATCCGATCAGTTTCGAATGTACGAGTTCAAGATTAAGAAGTGCACGCGAGGGAGATCTCACGACTGGACTGAATGTCCGTTCGCTCATCCCGGCGAGAAGGCACGGCGGCGAGATCCGAAGAGGTATTTCTATTCCGGTACGGCGTGTGCGGAATTTCGGAAGGGAAGCTGTAAGAAAGGAGACGCGTGTGAGTTCGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCTGCTCGTTACCGGACTCAACCGTGCAAGGACGGAACGAGTTGCAGGAGGAGAGTTTGTTTCTTCGCTCACACGGCGGAGCAACTTAGGGTTTTGCCTCAGCAGAGTCCTCGGAGTACGAGCTCCATCCCTTCGTACGACGGATCGCCTCTCCGACAAGCAATCGCGGCTCGTGCGAAACAAACGCCCTGTCTATCTTCTCCAGGAACGTCGTCGCCGCCAGTATCTCCTCGAATCGAGTCTCCGCCTCAATCGCCGATGATGAAATCCATAAATCGACCATACGCAGCGAGTTTACACCTCAACAAGGATCTCATCAAGGCGCTACCACTCTCGTCGTGGAATGTTCAGGTCGGATCTCCCGTTTTCGGATCTCCGAAGGAATCCACCGCCCGATCCGGATTCCGCAGCCTTCCAGACACTCCGACTCGGCCGGTGATCCGATATCTCGATTTCTGGGAGCTAGGCTGCGGTGAGGAGCCGGCAATGGAGCGAGTGGAGTCCGGGAGAGATCTACGGGCGAAAATGCTGGAGAAACTAAGGAAAGAGAACTCCGTCGGATGCAGCGATCAGAACCAGTACGGCGGCGGAGGTCTGGACGTCGGTTGGATCTCCGAGCTGCTCCAGTAA 1134 55.38 MMIGEQTKRSKPTLHITTWTFMDDTPSDLYGHSPESGSSGGDGGVKCDGCSTGGGVSYYLQKAFALMHPYSTEADFDCDVSDREAESPAETYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPKRYFYSGTACAEFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTAEQLRVLPQQSPRSTSSIPSYDGSPLRQAIAARAKQTPCLSSPGTSSPPVSPRIESPPQSPMMKSINRPYAASLHLNKDLIKALPLSSWNVQVGSPVFGSPKESTARSGFRSLPDTPTRPVIRYLDFWELGCGEEPAMERVESGRDLRAKMLEKLRKENSVGCSDQNQYGGGGLDVGWISELLQ 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11706287 11707825 + Sed0011162.1 Sed03g1772 707259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1772 377 Gene3D - 136 207 - -
Sed03g1772 377 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 161 IPR000571 GO:0046872(InterPro)
Sed03g1772 377 ProSiteProfiles Zinc finger C3H1-type profile. 136 163 IPR000571 GO:0046872(InterPro)
Sed03g1772 377 SMART c3hfinal6 136 162 IPR000571 GO:0046872(InterPro)
Sed03g1772 377 SMART c3hfinal6 171 194 IPR000571 GO:0046872(InterPro)
Sed03g1772 377 MobiDBLite consensus disorder prediction 228 257 - -
Sed03g1772 377 PANTHER UNKEMPT FAMILY MEMBER 86 376 IPR045234 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1772 Sed-Chr3:11706287 Sed13g1846 Sed-Chr13:23420974 3.60E-71 dispersed
Sed11g0026 Sed-Chr11:181821 Sed03g1772 Sed-Chr3:11706287 8.10E-134 wgd
Sed12g1796 Sed-Chr12:29019216 Sed03g1772 Sed-Chr3:11706287 2.30E-102 wgd
Sed03g1772 Sed-Chr3:11706287 Sed08g0848 Sed-Chr8:6886229 1.10E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37892 PF00642 zf-CCCH 1.80E-05 CL0537 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1772 - - - 0.0