Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1772 | ATGATGATCGGCGAGCAAACCAAGCGATCTAAACCGACGCTTCATATTACTACCTGGACGTTCATGGACGATACGCCATCGGATTTGTACGGTCATTCGCCGGAGAGCGGCAGCAGCGGCGGCGACGGCGGTGTCAAATGCGACGGTTGTTCCACCGGAGGTGGAGTCTCTTATTATCTCCAGAAAGCGTTTGCGTTGATGCATCCTTACTCGACGGAGGCGGATTTTGATTGTGACGTTTCAGATCGGGAGGCGGAATCTCCGGCGGAAACGTACTCATCCGATCAGTTTCGAATGTACGAGTTCAAGATTAAGAAGTGCACGCGAGGGAGATCTCACGACTGGACTGAATGTCCGTTCGCTCATCCCGGCGAGAAGGCACGGCGGCGAGATCCGAAGAGGTATTTCTATTCCGGTACGGCGTGTGCGGAATTTCGGAAGGGAAGCTGTAAGAAAGGAGACGCGTGTGAGTTCGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCTGCTCGTTACCGGACTCAACCGTGCAAGGACGGAACGAGTTGCAGGAGGAGAGTTTGTTTCTTCGCTCACACGGCGGAGCAACTTAGGGTTTTGCCTCAGCAGAGTCCTCGGAGTACGAGCTCCATCCCTTCGTACGACGGATCGCCTCTCCGACAAGCAATCGCGGCTCGTGCGAAACAAACGCCCTGTCTATCTTCTCCAGGAACGTCGTCGCCGCCAGTATCTCCTCGAATCGAGTCTCCGCCTCAATCGCCGATGATGAAATCCATAAATCGACCATACGCAGCGAGTTTACACCTCAACAAGGATCTCATCAAGGCGCTACCACTCTCGTCGTGGAATGTTCAGGTCGGATCTCCCGTTTTCGGATCTCCGAAGGAATCCACCGCCCGATCCGGATTCCGCAGCCTTCCAGACACTCCGACTCGGCCGGTGATCCGATATCTCGATTTCTGGGAGCTAGGCTGCGGTGAGGAGCCGGCAATGGAGCGAGTGGAGTCCGGGAGAGATCTACGGGCGAAAATGCTGGAGAAACTAAGGAAAGAGAACTCCGTCGGATGCAGCGATCAGAACCAGTACGGCGGCGGAGGTCTGGACGTCGGTTGGATCTCCGAGCTGCTCCAGTAA | 1134 | 55.38 | MMIGEQTKRSKPTLHITTWTFMDDTPSDLYGHSPESGSSGGDGGVKCDGCSTGGGVSYYLQKAFALMHPYSTEADFDCDVSDREAESPAETYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPKRYFYSGTACAEFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTAEQLRVLPQQSPRSTSSIPSYDGSPLRQAIAARAKQTPCLSSPGTSSPPVSPRIESPPQSPMMKSINRPYAASLHLNKDLIKALPLSSWNVQVGSPVFGSPKESTARSGFRSLPDTPTRPVIRYLDFWELGCGEEPAMERVESGRDLRAKMLEKLRKENSVGCSDQNQYGGGGLDVGWISELLQ | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 11706287 | 11707825 | + | Sed0011162.1 | Sed03g1772 | 707259 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1772 | 377 | Gene3D | - | 136 | 207 | - | - | |
Sed03g1772 | 377 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 141 | 161 | IPR000571 | GO:0046872(InterPro) | |
Sed03g1772 | 377 | ProSiteProfiles | Zinc finger C3H1-type profile. | 136 | 163 | IPR000571 | GO:0046872(InterPro) | |
Sed03g1772 | 377 | SMART | c3hfinal6 | 136 | 162 | IPR000571 | GO:0046872(InterPro) | |
Sed03g1772 | 377 | SMART | c3hfinal6 | 171 | 194 | IPR000571 | GO:0046872(InterPro) | |
Sed03g1772 | 377 | MobiDBLite | consensus disorder prediction | 228 | 257 | - | - | |
Sed03g1772 | 377 | PANTHER | UNKEMPT FAMILY MEMBER | 86 | 376 | IPR045234 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1772 | Sed-Chr3:11706287 | Sed13g1846 | Sed-Chr13:23420974 | 3.60E-71 | dispersed | |
Sed11g0026 | Sed-Chr11:181821 | Sed03g1772 | Sed-Chr3:11706287 | 8.10E-134 | wgd | |
Sed12g1796 | Sed-Chr12:29019216 | Sed03g1772 | Sed-Chr3:11706287 | 2.30E-102 | wgd | |
Sed03g1772 | Sed-Chr3:11706287 | Sed08g0848 | Sed-Chr8:6886229 | 1.10E-104 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37892 | PF00642 | zf-CCCH | 1.80E-05 | CL0537 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1772 | - | - | - | 0.0 |