Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1802 | ATGACCTCTGTGGCGGTTGCCGTCAACGGCGTTCGCGGCGGCAAAGGCGGCGGCGGAAGCCGCCGCGCCGTCAGATGGGCCGTCGAGAACCTCTTGCCAACCGCCGATCGCTTCATTTTGGTTCACGTGATGCCCAAAATCACCTCCATTCCAACCCCAATGGGGGATCGTGTGGCTGTCTCGGAGCTTGATGCAGATGTTGTAGCGCTGTATGTGCATGATGTTAAAGTGAAATATGAACAATTTTTTGTCCCTTTTAAGAAATTATGTAGAAGAGAAAAGTTTCTTCTTCTGGTAGAAACTTTGATTTTGGAAGATGACAATCCTGCCACTGCACTTTTGAGATATGCATCTGAATCTGGGATTAAACGCTTGATTTTGGGTTCTTGTTTTAGAACTTGCATAGCAAGGAAGCTAAAAGGGGATTCAGTGCCCTCATATATTCTGAGAACTGCTCCTAGTTCTTTTGATATTCATGTTATTTATAAGAGAAGAGTCATCACAAGAACAGCCAGTACTGCTTCATCTGCTGAAACCGACTCGAGACAGTGGATGCTCGGCGATACTGATTACTACAGAGGCTCCAGTGCCGTTAGTGAGAAATCAACTGAAACTTTTTCTTCTTCTTCCTTGTCGACTGTTCCCCGAAGGGGTGATAGCCTCGAAATTAATTCTACCGAGCAACTGAACTCTTTGAGTACTCTGACTGAGGAGGAAGATGTGCGAGCTGAAGTTGAATCACTGCAGCTAGAATTAGAATCCACGGTTTCCTTGTACAAACAAGCTTGTGAAGAACTAGTACATGCTCAGAAGAAGGTTCACTCACTTACATCAGAATGCCTTGAGGAATCAAGGAGAGTGAATGCTGCTTTAGAAAGGGAACAAATTTTGAGGAAAGTTGCTGCTGAAGAAAAAGAAAAGCACTTGGAAGCCATTAAGGAGCTTGAGGAGGCAAAAGACTTGCTGGCTAAAGAAGCTTATGAAAGGCAGTTGGCTGAGCTTAATGCCTTGAAGGAGTCCTTGGAGAAGCAGAAAATTGTTGATACTCTTCTGACTAATGATAGGAGGTACAGGAGATATACTACCGCCGAAATAGAAGTTGCGACGAATTTCTGCGATCCAGTTAATGTGATTGGCCAGGGAGGATATGGGAAAGTTTACAAATGCAGTCTCGATCATACCCCGGTAGCCATTAAGGTTTTTCAGCACGACATATTCGAAAAAAAGGACGAGTTTCTGAGAGAGGTTGAAATTCTGAGCCAGATACGTCATCCACATGTGGTTTTACTGCTCGGAGCTTGTCCCGAGCGAGGTTGCTTGATCTATGAATACATGGAAAATGGAAGCTTAGATGAACATATCTTGCTCAGAAATGGAAAAACTCCCCTCCCTTGGCCTACTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGACTTACATTTTTACATAATACAAAACCAGAACCTATCATTCATAGAGATCTAAAGCCAGGTAATGTCTTACTAGACAGAAACTTTGTAAGCAAAATCTCAGATGTTGGAATGGCTAAGATCATTGGCGATATCGTGCCCGACAATGTTACGGAGTACCGAAACACCATTCTTGCTGGTACTCTACATTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGACCGAAGTCAGATACATATGCACTCGGGGTAACAATTCTACAGTTGTTAACTGGACGGCAGCCACACGGTCTTCTTCTGGCTGTCGAGAATTCCATCGCAAGCGCCTCCCTTGCCGATATTCTAGATAAGTCAATTACTGACTGGCCTCTTGCTGAAGCTGAAGAGTTAGCTCGACTCGGGCTGAAGTGCTTGAAACTTAGATGCAGGGATAGGCCAGATCTTGAAACTGAAGTTCTTCCAGTCCTTAAAAGGCTTGTTGATTTTGCAGATACTTGTCAAAATGAAGAAAGAAGTCATGTCAATCCTCCAAGCCACTACTTCTGTCCAATCCTACAGGAGATAATGGAGGATCCTTATATAGCAGCAGATGGTTTTAGTTACGAGTATGTAGCGATTAAAGCATGGCTCGAGAAGTACGATGTATCGCCTGTGACAAAGCTTAAGCTTCAGCATTCTATGTTTATTCCAAACTACACTCTGCGTTCAGCCATACAAGAGTGGAAGTCGAGAGGGACATTTTCATCTTCCTAA | 2190 | 43.79 | MTSVAVAVNGVRGGKGGGGSRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDRVAVSELDADVVALYVHDVKVKYEQFFVPFKKLCRREKFLLLVETLILEDDNPATALLRYASESGIKRLILGSCFRTCIARKLKGDSVPSYILRTAPSSFDIHVIYKRRVITRTASTASSAETDSRQWMLGDTDYYRGSSAVSEKSTETFSSSSLSTVPRRGDSLEINSTEQLNSLSTLTEEEDVRAEVESLQLELESTVSLYKQACEELVHAQKKVHSLTSECLEESRRVNAALEREQILRKVAAEEKEKHLEAIKELEEAKDLLAKEAYERQLAELNALKESLEKQKIVDTLLTNDRRYRRYTTAEIEVATNFCDPVNVIGQGGYGKVYKCSLDHTPVAIKVFQHDIFEKKDEFLREVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDEHILLRNGKTPLPWPTRFRIVFQVASGLTFLHNTKPEPIIHRDLKPGNVLLDRNFVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGRQPHGLLLAVENSIASASLADILDKSITDWPLAEAEELARLGLKCLKLRCRDRPDLETEVLPVLKRLVDFADTCQNEERSHVNPPSHYFCPILQEIMEDPYIAADGFSYEYVAIKAWLEKYDVSPVTKLKLQHSMFIPNYTLRSAIQEWKSRGTFSSS | 729 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 11953194 | 11958194 | + | Sed0025764.1 | Sed03g1802 | 707289 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1802 | 729 | SUPERFAMILY | Adenine nucleotide alpha hydrolases-like | 17 | 154 | - | - | |
Sed03g1802 | 729 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 657 | 726 | IPR013083 | - | |
Sed03g1802 | 729 | Pfam | U-box domain | 656 | 722 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed03g1802 | 729 | Gene3D | Transferase(Phosphotransferase) domain 1 | 358 | 656 | - | - | |
Sed03g1802 | 729 | PANTHER | OS02G0152300 PROTEIN | 4 | 718 | IPR051348 | - | |
Sed03g1802 | 729 | Coils | Coil | 298 | 347 | - | - | |
Sed03g1802 | 729 | Coils | Coil | 259 | 279 | - | - | |
Sed03g1802 | 729 | ProSitePatterns | Protein kinases ATP-binding region signature. | 378 | 399 | IPR017441 | GO:0005524(InterPro) | |
Sed03g1802 | 729 | SMART | serkin_6 | 372 | 635 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g1802 | 729 | Pfam | Protein tyrosine and serine/threonine kinase | 376 | 628 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed03g1802 | 729 | Gene3D | HUPs | 2 | 156 | IPR014729 | - | |
Sed03g1802 | 729 | FunFam | Os07g0541700 protein | 445 | 535 | - | - | |
Sed03g1802 | 729 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 490 | 502 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed03g1802 | 729 | SMART | Ubox_2 | 658 | 720 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed03g1802 | 729 | SUPERFAMILY | Protein kinase-like (PK-like) | 355 | 628 | IPR011009 | - | |
Sed03g1802 | 729 | ProSiteProfiles | U-box domain profile. | 654 | 727 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed03g1802 | 729 | CDD | RING-Ubox_WDSUB1-like | 656 | 710 | - | - | |
Sed03g1802 | 729 | SUPERFAMILY | RING/U-box | 646 | 723 | - | - | |
Sed03g1802 | 729 | ProSiteProfiles | Protein kinase domain profile. | 372 | 635 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g1802 | 729 | CDD | STK_N | 3 | 163 | - | - | |
Sed03g1802 | 729 | Pfam | Universal stress protein family | 19 | 154 | IPR006016 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1802 | Sed-Chr3:11953194 | Sed05g0621 | Sed-Chr5:4475665 | 3.30E-121 | dispersed | |
Sed08g0080 | Sed-Chr8:432466 | Sed03g1802 | Sed-Chr3:11953194 | 6.50E-10 | transposed | |
Sed03g1802 | Sed-Chr3:11953194 | Sed09g1670 | Sed-Chr9:40101459 | 3.00E-114 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78905 | PF07714 | PK_Tyr_Ser-Thr | 2.80E-40 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1802 | - | - | - | 0.0 |