Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1802 ATGACCTCTGTGGCGGTTGCCGTCAACGGCGTTCGCGGCGGCAAAGGCGGCGGCGGAAGCCGCCGCGCCGTCAGATGGGCCGTCGAGAACCTCTTGCCAACCGCCGATCGCTTCATTTTGGTTCACGTGATGCCCAAAATCACCTCCATTCCAACCCCAATGGGGGATCGTGTGGCTGTCTCGGAGCTTGATGCAGATGTTGTAGCGCTGTATGTGCATGATGTTAAAGTGAAATATGAACAATTTTTTGTCCCTTTTAAGAAATTATGTAGAAGAGAAAAGTTTCTTCTTCTGGTAGAAACTTTGATTTTGGAAGATGACAATCCTGCCACTGCACTTTTGAGATATGCATCTGAATCTGGGATTAAACGCTTGATTTTGGGTTCTTGTTTTAGAACTTGCATAGCAAGGAAGCTAAAAGGGGATTCAGTGCCCTCATATATTCTGAGAACTGCTCCTAGTTCTTTTGATATTCATGTTATTTATAAGAGAAGAGTCATCACAAGAACAGCCAGTACTGCTTCATCTGCTGAAACCGACTCGAGACAGTGGATGCTCGGCGATACTGATTACTACAGAGGCTCCAGTGCCGTTAGTGAGAAATCAACTGAAACTTTTTCTTCTTCTTCCTTGTCGACTGTTCCCCGAAGGGGTGATAGCCTCGAAATTAATTCTACCGAGCAACTGAACTCTTTGAGTACTCTGACTGAGGAGGAAGATGTGCGAGCTGAAGTTGAATCACTGCAGCTAGAATTAGAATCCACGGTTTCCTTGTACAAACAAGCTTGTGAAGAACTAGTACATGCTCAGAAGAAGGTTCACTCACTTACATCAGAATGCCTTGAGGAATCAAGGAGAGTGAATGCTGCTTTAGAAAGGGAACAAATTTTGAGGAAAGTTGCTGCTGAAGAAAAAGAAAAGCACTTGGAAGCCATTAAGGAGCTTGAGGAGGCAAAAGACTTGCTGGCTAAAGAAGCTTATGAAAGGCAGTTGGCTGAGCTTAATGCCTTGAAGGAGTCCTTGGAGAAGCAGAAAATTGTTGATACTCTTCTGACTAATGATAGGAGGTACAGGAGATATACTACCGCCGAAATAGAAGTTGCGACGAATTTCTGCGATCCAGTTAATGTGATTGGCCAGGGAGGATATGGGAAAGTTTACAAATGCAGTCTCGATCATACCCCGGTAGCCATTAAGGTTTTTCAGCACGACATATTCGAAAAAAAGGACGAGTTTCTGAGAGAGGTTGAAATTCTGAGCCAGATACGTCATCCACATGTGGTTTTACTGCTCGGAGCTTGTCCCGAGCGAGGTTGCTTGATCTATGAATACATGGAAAATGGAAGCTTAGATGAACATATCTTGCTCAGAAATGGAAAAACTCCCCTCCCTTGGCCTACTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGACTTACATTTTTACATAATACAAAACCAGAACCTATCATTCATAGAGATCTAAAGCCAGGTAATGTCTTACTAGACAGAAACTTTGTAAGCAAAATCTCAGATGTTGGAATGGCTAAGATCATTGGCGATATCGTGCCCGACAATGTTACGGAGTACCGAAACACCATTCTTGCTGGTACTCTACATTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGACCGAAGTCAGATACATATGCACTCGGGGTAACAATTCTACAGTTGTTAACTGGACGGCAGCCACACGGTCTTCTTCTGGCTGTCGAGAATTCCATCGCAAGCGCCTCCCTTGCCGATATTCTAGATAAGTCAATTACTGACTGGCCTCTTGCTGAAGCTGAAGAGTTAGCTCGACTCGGGCTGAAGTGCTTGAAACTTAGATGCAGGGATAGGCCAGATCTTGAAACTGAAGTTCTTCCAGTCCTTAAAAGGCTTGTTGATTTTGCAGATACTTGTCAAAATGAAGAAAGAAGTCATGTCAATCCTCCAAGCCACTACTTCTGTCCAATCCTACAGGAGATAATGGAGGATCCTTATATAGCAGCAGATGGTTTTAGTTACGAGTATGTAGCGATTAAAGCATGGCTCGAGAAGTACGATGTATCGCCTGTGACAAAGCTTAAGCTTCAGCATTCTATGTTTATTCCAAACTACACTCTGCGTTCAGCCATACAAGAGTGGAAGTCGAGAGGGACATTTTCATCTTCCTAA 2190 43.79 MTSVAVAVNGVRGGKGGGGSRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDRVAVSELDADVVALYVHDVKVKYEQFFVPFKKLCRREKFLLLVETLILEDDNPATALLRYASESGIKRLILGSCFRTCIARKLKGDSVPSYILRTAPSSFDIHVIYKRRVITRTASTASSAETDSRQWMLGDTDYYRGSSAVSEKSTETFSSSSLSTVPRRGDSLEINSTEQLNSLSTLTEEEDVRAEVESLQLELESTVSLYKQACEELVHAQKKVHSLTSECLEESRRVNAALEREQILRKVAAEEKEKHLEAIKELEEAKDLLAKEAYERQLAELNALKESLEKQKIVDTLLTNDRRYRRYTTAEIEVATNFCDPVNVIGQGGYGKVYKCSLDHTPVAIKVFQHDIFEKKDEFLREVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDEHILLRNGKTPLPWPTRFRIVFQVASGLTFLHNTKPEPIIHRDLKPGNVLLDRNFVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGRQPHGLLLAVENSIASASLADILDKSITDWPLAEAEELARLGLKCLKLRCRDRPDLETEVLPVLKRLVDFADTCQNEERSHVNPPSHYFCPILQEIMEDPYIAADGFSYEYVAIKAWLEKYDVSPVTKLKLQHSMFIPNYTLRSAIQEWKSRGTFSSS 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11953194 11958194 + Sed0025764.1 Sed03g1802 707289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1802 729 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 154 - -
Sed03g1802 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 657 726 IPR013083 -
Sed03g1802 729 Pfam U-box domain 656 722 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed03g1802 729 Gene3D Transferase(Phosphotransferase) domain 1 358 656 - -
Sed03g1802 729 PANTHER OS02G0152300 PROTEIN 4 718 IPR051348 -
Sed03g1802 729 Coils Coil 298 347 - -
Sed03g1802 729 Coils Coil 259 279 - -
Sed03g1802 729 ProSitePatterns Protein kinases ATP-binding region signature. 378 399 IPR017441 GO:0005524(InterPro)
Sed03g1802 729 SMART serkin_6 372 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1802 729 Pfam Protein tyrosine and serine/threonine kinase 376 628 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g1802 729 Gene3D HUPs 2 156 IPR014729 -
Sed03g1802 729 FunFam Os07g0541700 protein 445 535 - -
Sed03g1802 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g1802 729 SMART Ubox_2 658 720 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed03g1802 729 SUPERFAMILY Protein kinase-like (PK-like) 355 628 IPR011009 -
Sed03g1802 729 ProSiteProfiles U-box domain profile. 654 727 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed03g1802 729 CDD RING-Ubox_WDSUB1-like 656 710 - -
Sed03g1802 729 SUPERFAMILY RING/U-box 646 723 - -
Sed03g1802 729 ProSiteProfiles Protein kinase domain profile. 372 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1802 729 CDD STK_N 3 163 - -
Sed03g1802 729 Pfam Universal stress protein family 19 154 IPR006016 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1802 Sed-Chr3:11953194 Sed05g0621 Sed-Chr5:4475665 3.30E-121 dispersed
Sed08g0080 Sed-Chr8:432466 Sed03g1802 Sed-Chr3:11953194 6.50E-10 transposed
Sed03g1802 Sed-Chr3:11953194 Sed09g1670 Sed-Chr9:40101459 3.00E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78905 PF07714 PK_Tyr_Ser-Thr 2.80E-40 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1802 - - - 0.0