Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1808 ATGGACGGAGGAGCGGCTTACAATCCCCGGACTGTGGAAGAGGTTTTCAGGGACTTCAAGGGCCGCCGTGCCGGAATGATTCGAGCCCTCACCGCCGATGTGGAGGAATTTTATCAGCAGTGTGACCCTGAAAAGGAAAACCTCTGCCTTTATGGGTTCCCTAATGAGCAGTGGGAAGTTAATTTGCCTGCTGAAGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGTATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCCCTTGTTGCCGTTCATAGTGATGCATGGCTTCTTGCTGTGGCTTTCTATTTTGGTGCTCGATTTGGCTTTGATAAACCTGACAGGAAACGCCTTTTTACAATGATCAATGATTTACCCACTATATTTGAGGTTGTGACGGGAAGTGTAAAGAAACAGGGAAAAGAAAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGACAGACTCAAAAGGGCGTGGATCTGAATCAAGCAAATTGTCCAAGGGGTTGGCAAAAGATGAGGATGAGGAACTGGACGTGGGAGACGAGGAGGAGCACGGGGAGACCTTGTGCGGGGCGTGCGGAGAGAATTATGCATCGGAGGAGTTCTGGATATGTTGCGACATATGCGAGAAATGGTTCCATGGCAAGTGTGTGAAGATAACTCCTGCAAGGGCCGAACACATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGAGAGCACGGCCATGA 756 48.15 MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTADVEEFYQQCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKPDRKRLFTMINDLPTIFEVVTGSVKKQGKEKSLVSNNSSNKSKTDSKGRGSESSKLSKGLAKDEDEELDVGDEEEHGETLCGACGENYASEEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11980566 11984240 - Sed0025981.1 Sed03g1808 707295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1808 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Sed03g1808 251 MobiDBLite consensus disorder prediction 162 182 - -
Sed03g1808 251 MobiDBLite consensus disorder prediction 147 190 - -
Sed03g1808 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Sed03g1808 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Sed03g1808 251 SUPERFAMILY FYVE/PHD zinc finger 189 248 IPR011011 -
Sed03g1808 251 Pfam PHD-finger 198 244 IPR019787 -
Sed03g1808 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Sed03g1808 251 CDD PHD_AL_plant 197 247 IPR044104 -
Sed03g1808 251 MobiDBLite consensus disorder prediction 147 161 - -
Sed03g1808 251 SMART PHD_3 197 245 IPR001965 -
Sed03g1808 251 PANTHER CPG BINDING PROTEIN 7 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Sed03g1808 251 FunFam PHD finger alfin-like protein 190 246 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1808 Sed-Chr3:11980566 Sed11g0863 Sed-Chr11:20748200 9.90E-110 dispersed
Sed03g1808 Sed-Chr3:11980566 Sed09g1666 Sed-Chr9:40082862 3.10E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37896 PF12165 Alfin 1.20E-69 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1808 K26274 - rcu:8272513 466.848