Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed03g1813 | ATGCCTGTGCATCTCACGCCGAATGCAATCTCTTCGATTGTCGCCGGCGACGTCAATTCCAAGCCGCTGGTTCAGGTCGTTGATATCAAGCTGATCGGTAACGTGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCCGTTTCTTCCGAGCAGGCGATGCTTGCTACTCAGCTTAACGATGTTGTTAAGACTGGACGAGTCAAGAAAGGATCCGTTATCCAGTTGATTGATTACGTTTGCAGTCCAATCAAGAACCGCAAGATTATAGTTGTGCTCAGCCTGGAAACTATTATATTGGATTGTGAGATGATTGGGAATCCAAAATCCTCTGCTCAACCAGGGGCTTTACCACAGAAAGCAATGCCATCTGGAACTTTAGAGCAACCTGCCAAGGTTAGTAATGGTCTTCTGAGTGCCAGAAATCCAGTTCATAATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCATATCAGCCACCTCCAAATTATAAAAATCACGGTGCAATCATTAAGAACGAGGCACCAGCTCGTATAATCCCTATAGCTGCATTGAATCCTTATCAGGGACGATGGGCTATAAAGGCAAGAGTCACTGCAAAGGGTGATCTCCGCCGCTATAATAATGCTAAAGGAGATGGAAAAGTTTTCTCTTTTGACCTCCTGGATTCTGATGGAGGAGAGATACGTATAACCTGCTTCAATGCTGTTGTTGATCTCTTCTACGAGGTCATAGAAGTTGGTAAAGTCTACTTGATTTCTAAAGGTAGCCTAAAACCCGCTCGGAAGGATTTCAATCACCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACTGTGGAACTTTGCCCAGAAGAAGATAATACCATTCCAAGACAGCAGTTTTCTTTCAAACCTATCAGTGAAATTGAGAGTGCTGAAACCAACTCTATTCTGGATGTTATTGGCATTGTAACGTCTATCAATCCGTCAATTCCTGTGATGAGAAAAAATGGTATGGAAACTCAAAGAAGAGTTCTGAATTTAAAGGATTCATCTGGCAGGAGTGTTGAGCTGACAATGTGGGGAGATTTTTGCAACAAAGAAGGTCAAAAACTGCAAGAAATGATCAACTCCGGCCTCTCTCCAGTTTTAGCTGTGAAATCTGGAAAGGTTAGTGATTTCACTGGGAAATCCATTGGCACAATCTCATCTACTCAGCTTTTCATAAACCCAGATCTTTCCGAGGCTTACATCTTGAGGAACTGGTACGACGGTGGGGGGAAGAACACTACTTCCCTGTCAATTTCTAAAGAAATAATCGGAGGAGCAGCCAAGAATGAGATTCGAATAACCGTGTCTCAGATTAAAGATGAAGGTCTTGGTAGATCTGATAAACCAGATTGGATTACCATGAAAGCAACAATATCATTCATCAAAACAGATTCATTCTGCTACACAGCATGTCCACTAATGATTGGAGATCGACAATGCAACAAGAAGGTGACAAGATCAGGAAACTCAAAATGGGTATGTGATAGATGCAATCAAGAATTCGAAGATTGCGATTACCGATATCTTCTTCAAGCTCAAATCCAAGACCATACTGGATTGACATGGGTGACAGCCTTCCAAGAATCTGGGGAAGAGATTCTAGGTGTTTCAGCCAAGGAGTTGTACATGTTGAAGTATGAAGAACAGGATGATGTCAAGTTTGGTGAAATAATCAAAAGTAAAATTTTCGATCAATTTCTGTTCAAGCTCAAAATTAAAGAGGAGACATATGGGGATGAACAGAGGGTGAAAAATACGGTAGTCAAGGCAGATAGGGTAAACCATTCTTCCGAAAGCAAATATATGTTGGATTTGCTTTCAAAATTTTCCAGGTAA | 1872 | 41.99 | MPVHLTPNAISSIVAGDVNSKPLVQVVDIKLIGNVQERYSLLISDAVSSEQAMLATQLNDVVKTGRVKKGSVIQLIDYVCSPIKNRKIIVVLSLETIILDCEMIGNPKSSAQPGALPQKAMPSGTLEQPAKVSNGLLSARNPVHNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRITCFNAVVDLFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVELCPEEDNTIPRQQFSFKPISEIESAETNSILDVIGIVTSINPSIPVMRKNGMETQRRVLNLKDSSGRSVELTMWGDFCNKEGQKLQEMINSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDLSEAYILRNWYDGGGKNTTSLSISKEIIGGAAKNEIRITVSQIKDEGLGRSDKPDWITMKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWVCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQESGEEILGVSAKELYMLKYEEQDDVKFGEIIKSKIFDQFLFKLKIKEETYGDEQRVKNTVVKADRVNHSSESKYMLDLLSKFSR | 623 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 12025533 | 12029025 | - | Sed0015067.1 | Sed03g1813 | 707300 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed03g1813 | 623 | FunFam | Replication protein A subunit | 290 | 429 | - | - | |
| Sed03g1813 | 623 | Gene3D | - | 290 | 430 | IPR012340 | - | |
| Sed03g1813 | 623 | FunFam | Replication protein A subunit | 4 | 111 | - | - | |
| Sed03g1813 | 623 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 179 | 600 | IPR004591 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER) | |
| Sed03g1813 | 623 | Pfam | Replication factor-A protein 1, N-terminal domain | 5 | 97 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Sed03g1813 | 623 | SUPERFAMILY | Nucleic acid-binding proteins | 295 | 425 | IPR012340 | - | |
| Sed03g1813 | 623 | Pfam | OB-fold nucleic acid binding domain | 193 | 263 | IPR004365 | GO:0003676(InterPro) | |
| Sed03g1813 | 623 | SUPERFAMILY | Nucleic acid-binding proteins | 177 | 290 | IPR012340 | - | |
| Sed03g1813 | 623 | CDD | RPA1_DBD_B | 312 | 419 | - | - | |
| Sed03g1813 | 623 | SUPERFAMILY | Nucleic acid-binding proteins | 1 | 106 | IPR012340 | - | |
| Sed03g1813 | 623 | Gene3D | - | 431 | 622 | IPR012340 | - | |
| Sed03g1813 | 623 | NCBIfam | replication factor-a protein 1 (rpa1) | 4 | 620 | IPR004591 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Sed03g1813 | 623 | Gene3D | - | 177 | 286 | IPR012340 | - | |
| Sed03g1813 | 623 | CDD | RPA1N | 9 | 98 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Sed03g1813 | 623 | CDD | RPA1_DBD_C | 447 | 620 | IPR047192 | - | |
| Sed03g1813 | 623 | Pfam | Replication protein A OB domain | 301 | 405 | IPR031657 | - | |
| Sed03g1813 | 623 | Gene3D | - | 3 | 111 | IPR012340 | - | |
| Sed03g1813 | 623 | CDD | RPA1_DBD_A | 180 | 283 | - | - | |
| Sed03g1813 | 623 | FunFam | Replication protein A subunit | 430 | 621 | - | - | |
| Sed03g1813 | 623 | FunFam | Replication protein A subunit | 177 | 287 | - | - | |
| Sed03g1813 | 623 | SUPERFAMILY | Nucleic acid-binding proteins | 444 | 621 | IPR012340 | - | |
| Sed03g1813 | 623 | Pfam | Replication factor-A C terminal domain | 463 | 614 | IPR013955 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g1813 | Sed-Chr3:12025533 | Sed04g0901 | Sed-Chr4:8128451 | 3.70E-198 | dispersed | |
| Sed03g1813 | Sed-Chr3:12025533 | Sed08g0277 | Sed-Chr8:1617414 | 7.50E-82 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed03g1813 | K07466 | - | csv:101207583 | 1151.35 |