Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1822 ATGAGTGGAGGAAGAAACAGGTTCCCATTTACTTCAGCTCAGTGGCAAGAGCTAGAACACCAAGCTCTCATTTTCAAACACATGGTTTCTGGTATCCCAATCCCTCCTGATTTGCTCTTCACCATCAAAAGAACTTCTTTGGATTCACCTTTCATTTCCAAGCTCTTTCCCCACCAGTATCCTGAAGTTGGATGGAACTATTTGCAAATGGGTTCAGGGAGGAAGATTGATCCTGAGCCAGGAAGGTGTAGAAGAACAGATGGGAAAAAATGGAGATGTTCCAAAGAGGCATATCCAGATTCTAAGTACTGTGAGAGACATATGCACAGAGGCAAGAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACATCATCAGCAACAACAAATGCTTTGAACTCTAATCCTTCAACTCCAGCCATTTCTTCCATCACTCAAAACTCCACTTTCCCTTCTTCCTCTCATTCACTTGCTCCATTCACCAACTCATTACCCTATGAAACTCACCCTTTTCTCTATCAACATGGCTCTTCTTCTGCTCATCTTGACTCTGGTTCTTACTCCCATAACAACCCAGATTACAGAAGAAACAGGTATATTTATGGGGTAAAGGAGGATGTTGAGGAGCATCCATTTCTATCAGAAGAACATTCTGGAAACATGAGAGGCTTCTCTGATTCATGGCAGCTAACTCCTTTGACAATGAATAGCTCATCCTCATCTTCCAAACAAAAGGAATGCTCTGCTTTACAAGGTGACTACTCTTCTTACTTGCAGCTTCAGAGCTTTGGGGACTCCCCAAAGCAACAACTAAAGCAAGAGGAACATTACTACACAATGGGAAAGTATAAGGAAATGCAGAGCAATATGGAAAGAGAGGAGCCACAGAAGACTATGCATCATTTCTTTGATGAATTGTCTCCAAAAGACAAAGAATCATGGCTTGATTTGGTTGATAAGTCATCCAATACTGGCCTTTCAATAAATAATTCTTAG 996 41.37 MSGGRNRFPFTSAQWQELEHQALIFKHMVSGIPIPPDLLFTIKRTSLDSPFISKLFPHQYPEVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTSSATTNALNSNPSTPAISSITQNSTFPSSSHSLAPFTNSLPYETHPFLYQHGSSSAHLDSGSYSHNNPDYRRNRYIYGVKEDVEEHPFLSEEHSGNMRGFSDSWQLTPLTMNSSSSSSKQKECSALQGDYSSYLQLQSFGDSPKQQLKQEEHYYTMGKYKEMQSNMEREEPQKTMHHFFDELSPKDKESWLDLVDKSSNTGLSINNS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12067691 12070927 - Sed0018720.1 Sed03g1822 707309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1822 331 SMART QLQ_2 8 44 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed03g1822 331 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Sed03g1822 331 PANTHER GROWTH-REGULATING FACTOR 5 5 328 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Sed03g1822 331 Pfam QLQ 9 42 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed03g1822 331 MobiDBLite consensus disorder prediction 125 155 - -
Sed03g1822 331 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed03g1822 331 Pfam WRC 78 120 IPR014977 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1630 Sed-Chr2:51689874 Sed03g1822 Sed-Chr3:12067691 3.70E-23 dispersed
Sed03g1822 Sed-Chr3:12067691 Sed06g0051 Sed-Chr6:308788 8.90E-58 dispersed
Sed12g1716 Sed-Chr12:28346593 Sed03g1822 Sed-Chr3:12067691 2.70E-65 wgd
Sed03g1822 Sed-Chr3:12067691 Sed08g0909 Sed-Chr8:7619195 1.60E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37898 PF08879 WRC 6.60E-21 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1822 - - - 0.0