Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1822 | ATGAGTGGAGGAAGAAACAGGTTCCCATTTACTTCAGCTCAGTGGCAAGAGCTAGAACACCAAGCTCTCATTTTCAAACACATGGTTTCTGGTATCCCAATCCCTCCTGATTTGCTCTTCACCATCAAAAGAACTTCTTTGGATTCACCTTTCATTTCCAAGCTCTTTCCCCACCAGTATCCTGAAGTTGGATGGAACTATTTGCAAATGGGTTCAGGGAGGAAGATTGATCCTGAGCCAGGAAGGTGTAGAAGAACAGATGGGAAAAAATGGAGATGTTCCAAAGAGGCATATCCAGATTCTAAGTACTGTGAGAGACATATGCACAGAGGCAAGAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACATCATCAGCAACAACAAATGCTTTGAACTCTAATCCTTCAACTCCAGCCATTTCTTCCATCACTCAAAACTCCACTTTCCCTTCTTCCTCTCATTCACTTGCTCCATTCACCAACTCATTACCCTATGAAACTCACCCTTTTCTCTATCAACATGGCTCTTCTTCTGCTCATCTTGACTCTGGTTCTTACTCCCATAACAACCCAGATTACAGAAGAAACAGGTATATTTATGGGGTAAAGGAGGATGTTGAGGAGCATCCATTTCTATCAGAAGAACATTCTGGAAACATGAGAGGCTTCTCTGATTCATGGCAGCTAACTCCTTTGACAATGAATAGCTCATCCTCATCTTCCAAACAAAAGGAATGCTCTGCTTTACAAGGTGACTACTCTTCTTACTTGCAGCTTCAGAGCTTTGGGGACTCCCCAAAGCAACAACTAAAGCAAGAGGAACATTACTACACAATGGGAAAGTATAAGGAAATGCAGAGCAATATGGAAAGAGAGGAGCCACAGAAGACTATGCATCATTTCTTTGATGAATTGTCTCCAAAAGACAAAGAATCATGGCTTGATTTGGTTGATAAGTCATCCAATACTGGCCTTTCAATAAATAATTCTTAG | 996 | 41.37 | MSGGRNRFPFTSAQWQELEHQALIFKHMVSGIPIPPDLLFTIKRTSLDSPFISKLFPHQYPEVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTSSATTNALNSNPSTPAISSITQNSTFPSSSHSLAPFTNSLPYETHPFLYQHGSSSAHLDSGSYSHNNPDYRRNRYIYGVKEDVEEHPFLSEEHSGNMRGFSDSWQLTPLTMNSSSSSSKQKECSALQGDYSSYLQLQSFGDSPKQQLKQEEHYYTMGKYKEMQSNMEREEPQKTMHHFFDELSPKDKESWLDLVDKSSNTGLSINNS | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 12067691 | 12070927 | - | Sed0018720.1 | Sed03g1822 | 707309 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1822 | 331 | SMART | QLQ_2 | 8 | 44 | IPR014978 | GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed03g1822 | 331 | ProSiteProfiles | WRC domain profile. | 77 | 121 | IPR014977 | - | |
Sed03g1822 | 331 | PANTHER | GROWTH-REGULATING FACTOR 5 | 5 | 328 | IPR031137 | GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro) | |
Sed03g1822 | 331 | Pfam | QLQ | 9 | 42 | IPR014978 | GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed03g1822 | 331 | MobiDBLite | consensus disorder prediction | 125 | 155 | - | - | |
Sed03g1822 | 331 | ProSiteProfiles | QLQ domain profile. | 9 | 44 | IPR014978 | GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed03g1822 | 331 | Pfam | WRC | 78 | 120 | IPR014977 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1630 | Sed-Chr2:51689874 | Sed03g1822 | Sed-Chr3:12067691 | 3.70E-23 | dispersed | |
Sed03g1822 | Sed-Chr3:12067691 | Sed06g0051 | Sed-Chr6:308788 | 8.90E-58 | dispersed | |
Sed12g1716 | Sed-Chr12:28346593 | Sed03g1822 | Sed-Chr3:12067691 | 2.70E-65 | wgd | |
Sed03g1822 | Sed-Chr3:12067691 | Sed08g0909 | Sed-Chr8:7619195 | 1.60E-86 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37898 | PF08879 | WRC | 6.60E-21 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1822 | - | - | - | 0.0 |