Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1822 ATGAGTGGAGGAAGAAACAGGTTCCCATTTACTTCAGCTCAGTGGCAAGAGCTAGAACACCAAGCTCTCATTTTCAAACACATGGTTTCTGGTATCCCAATCCCTCCTGATTTGCTCTTCACCATCAAAAGAACTTCTTTGGATTCACCTTTCATTTCCAAGCTCTTTCCCCACCAGTATCCTGAAGTTGGATGGAACTATTTGCAAATGGGTTCAGGGAGGAAGATTGATCCTGAGCCAGGAAGGTGTAGAAGAACAGATGGGAAAAAATGGAGATGTTCCAAAGAGGCATATCCAGATTCTAAGTACTGTGAGAGACATATGCACAGAGGCAAGAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACATCATCAGCAACAACAAATGCTTTGAACTCTAATCCTTCAACTCCAGCCATTTCTTCCATCACTCAAAACTCCACTTTCCCTTCTTCCTCTCATTCACTTGCTCCATTCACCAACTCATTACCCTATGAAACTCACCCTTTTCTCTATCAACATGGCTCTTCTTCTGCTCATCTTGACTCTGGTTCTTACTCCCATAACAACCCAGATTACAGAAGAAACAGGTATATTTATGGGGTAAAGGAGGATGTTGAGGAGCATCCATTTCTATCAGAAGAACATTCTGGAAACATGAGAGGCTTCTCTGATTCATGGCAGCTAACTCCTTTGACAATGAATAGCTCATCCTCATCTTCCAAACAAAAGGAATGCTCTGCTTTACAAGGTGACTACTCTTCTTACTTGCAGCTTCAGAGCTTTGGGGACTCCCCAAAGCAACAACTAAAGCAAGAGGAACATTACTACACAATGGGAAAGTATAAGGAAATGCAGAGCAATATGGAAAGAGAGGAGCCACAGAAGACTATGCATCATTTCTTTGATGAATTGTCTCCAAAAGACAAAGAATCATGGCTTGATTTGGTTGATAAGTCATCCAATACTGGCCTTTCAATAAATAATTCTTAG 996 41.37 MSGGRNRFPFTSAQWQELEHQALIFKHMVSGIPIPPDLLFTIKRTSLDSPFISKLFPHQYPEVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTSSATTNALNSNPSTPAISSITQNSTFPSSSHSLAPFTNSLPYETHPFLYQHGSSSAHLDSGSYSHNNPDYRRNRYIYGVKEDVEEHPFLSEEHSGNMRGFSDSWQLTPLTMNSSSSSSKQKECSALQGDYSSYLQLQSFGDSPKQQLKQEEHYYTMGKYKEMQSNMEREEPQKTMHHFFDELSPKDKESWLDLVDKSSNTGLSINNS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12067691 12070927 - Sed0018720.1 Sed03g1822 707309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1822 331 SMART QLQ_2 8 44 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed03g1822 331 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Sed03g1822 331 PANTHER GROWTH-REGULATING FACTOR 5 5 328 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Sed03g1822 331 Pfam QLQ 9 42 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed03g1822 331 MobiDBLite consensus disorder prediction 125 155 - -
Sed03g1822 331 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed03g1822 331 Pfam WRC 78 120 IPR014977 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1822 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1630 Sed-Chr2:51689874 Sed03g1822 Sed-Chr3:12067691 3.70E-23 dispersed
Sed03g1822 Sed-Chr3:12067691 Sed06g0051 Sed-Chr6:308788 8.90E-58 dispersed
Sed12g1716 Sed-Chr12:28346593 Sed03g1822 Sed-Chr3:12067691 2.70E-65 wgd
Sed03g1822 Sed-Chr3:12067691 Sed08g0909 Sed-Chr8:7619195 1.60E-86 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed02g0553 . 46 368 GRF Transcription Factor Family AT3G52910 52.7 2.1e-58 224.2
Sed06g0051 . 11 110 GRF Transcription Factor Family AT3G13960 80.0 7.0e-49 192.6
Sed06g2262 . 2 110 GRF Transcription Factor Family AT3G13960 74.3 4.5e-48 189.9
Sed03g1822 . 2 111 GRF Transcription Factor Family AT3G13960 69.6 4.8e-42 169.9
Sed08g0909 . 8 110 GRF Transcription Factor Family AT3G13960 72.8 1.8e-41 167.9
Sed12g1716 . 3 105 GRF Transcription Factor Family AT3G13960 69.9 6.5e-39 159.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002565 3 3 1 2 3 1 4 1 1 1 2 1 4 1 2 3 1 1 3 1 2 2 2 2 2 1 2 3 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37898 PF08879 WRC 6.60E-21 No_clan Sed TF