Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1843 ATGAAGGCTCCCTCAAATGGGTTTATGGCCAATTCTGGAGAAGGTGAAAGGAAAAATATGAATTCTGAGTTATGGCATGCTTGTGCTGGACCACTGGTTTCATTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCATCGATGAATAAGGATGCTGATTTCATTCCAAACTACCCTAACCTTTCTTCGAAGTTGATCTGCATGCTCCATAATGTCACATTACATGCTGATCTCGAAACTGATGAAGTGTATGCACAAATGACCCTTCAACCGGTGAACAAATATGAAAAAGAAGCTTTATTGGCATCAGACATTGGCCTCAAGCAAAGCAGGCAGCCTGCTGAATTCTTCTGCAAAACTCTAACAGCTAGTGACACCAGCACTCACGGTGGATTCTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTTCCCCCATTAGACTTCTCGATGCAACCCCCTGCTCAGGAGCTGGTGGCTAGAGATTTGCATGAAAATTCATGGACATTCAGACATATTTACCGTGGCCAACCAAAACGACACCTTCTGACCACTGGCTGGAGTGTTTTTGTTAGCACAAAACGACTCTTTGCTGGAGACTCAGTGCTCTTTATAAGAGATGAAAAGTCTCAGCTTCTCTTAGGCATAAGACGCGCTAACAGGCAGCAGCCAGCTCTCTCTTCGTCAGTCATATCAAGTGATAGCATGCACATAGGGATTCTTGCTTCTGCTGCTCATGCAGCTGCAAATAACAGTCCTTTTACTATATTTTACAACCCTAGGGCTAGTCCTTCTGAATTTGTGATTCCTTTGGCCAAGTATAACAAAGCAATGTATACGCAAGTTTCACTTGGCATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTGCGCAGGTATATGGGTACAATTACTGGTATCAGTGACATGGATTCTGTCCGATGGAAAAATTCACAGTGGCGTAATCTTCAGGTTGGATGGGATGAATCGGCTGCTGGTGAACGACCAAACCGAGTTTCTATATGGGAAGTTGAGCCCGTTGTGACTCCCTTCTACATTTGTCCACCTCCATTTTTTAGACCCAAATTCCCTAAACAACCAGGGATGCCAGATGACGAGTCTGATATTGAAAATGCTTTTAAAAGAGCCATGCCGTGGTTTGGTGATGACTTTGGCATGAAAGATGCACCAAGCTCCATTTTTCCCGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAGCCTAGCAATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTGCTCCTGGTGCTCTGCATGGAACTCTTACTAATGATGACCCGTCTAAATTATTGAGTTTTCAGACACCAGTACTGTCTTCACCAAATCTCCAATTCGGCAAAGCAAATCAACAGAACCAAGTTGCCCAGCTGCCAGCAACTACGTGGTCTCAACAGCAGCAGTTGCAGCAATTACTTCAAGTTCCTGCAAGCCAACAGTTACAACAGCAGTTGCCACCCCAGCAGGAACTTCAGCAGCAGCAACAACAACAACAACAGTCACAGCAGCAGCAACTTCAGTCACAACAGCTGCCCCAGCAGCAGCAACTCCAATCACAACAGCTGCCCCAGCAGCAGCAGCTCCAATCACAACAGCTGCCCCAGCAGCAGCTCCAATCACAACAGCTGACCCAGCAGCCACAACTCCAGTCACAACAGCTGCCCCAGCAGCAGCCACAACGACAACAACAGACCTCCCAACCTGCTCTTCTGAATAATGGTGTAGCTGCTGCCAACCATTTGTCCAATCAGAGTTTGCAACAACCGCTTGTATACGCTCAGTTGCAGCAACAGCAACAACAATTGCTTGCAGGAAATCTACAATCACATCAAACTAGCCAACCATCCAATAAAAACTCATTTCAGACTACATCTTTATCGCAAGAAACCCAGTTTCAGCCTCAAATAGAGCAGCAACCTAGTCTTCTTTCGAGGCACCAGCAGCAGGCACAATTTCAACAGGCCCCACTACAACTGTTGCAACAAAGTCTGACTCAAAGAACACAACAGCCACCACAAGTTCAGCAATTTTCACAGCCAATCCCATCAGAGCAACTTCAATTACAGCTGCTACAGAAGCTGCAACAGCAGCAGCAGCTGCAGCAACCATTGCTCTCCCAAGCTAGCCCACTATTACCACCTCAGCTGATACAGCAGCAACATGTCCATCCGCAAAACCAACAGTTACCACCATTGCCTTTATCGAATCAGCCACAGTTCAATTCTAGTGGAGGCAGCTTCCAAACAGAAAAACTTAACAGCAATGGCTTCTCAAGTTTAGGTCTCATGCAGTCCCAGCAGGTTCCTATTACTCAATCCCATAACCAATTCAAACCAACCACGGCAATTAAGGCGTATTCTGGACTGACTGATGGTGATGCTCCATCTTGTTCAACTTCACCTTCCACTAATAATTGCCAAGTTTCTGTATCAAACCTGCTCAATAAGAACCAGCAAGGAGCAGCCGTACTGGGGGGAGATTCAGTAGTTGAGCCTGCAGCTAACCTTGCTCAGGATCTACAAAGCAAACCGGATTTGCGGATCAAACATGAGTTTCCTAGCTCAAAAGGATTAGACCAACTAAAGTACAAAGGCACCGTTCCTGATCAGTTAGAAGCATCTTCTTCTGGAACATCATATTGTTTGGATGCTGGTACCATTCAACAAACTTTCCCACTCCCTACATGTTTGGATAACGATGTACAATCACACCCACGAAACAGCATCCCTTTCAGTAATAGCATTGATGGATTGACACCGGATACCTTATTGTCGAGGGGATATGACTCTCAAAAAGATCTTCAGAACTTACTTTCTAATTATGGTGGGGGTGTGCCAAGAGATATTGAGACGGAGTTGTCCACTGCTGCAATCAGCTCTCAGTCATTTGGGGTTCCAAACTTGCCTTTCAAACCTAGCTGCTCAAATGATGTCAACGTAAATGAAGCCGGAGCCTTGAGTGGTGGATTGTGGGCGAATCACAGTCAACGTATGCGGACATACACAAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGTATCGATGTCACTCGCTACAAAGAATATGACGAGCTTAGACATGATCTTGCCCGCATGTTTGGCATCGAAGGGCAGTTAGAAGATCCTCAGCGAACTGATTGGAAACTTGTTTATGTGGATCATGAAAATGATATACTTCTAGTTGGCGATGATCCTTGGGAGGAGTTTGTGAGCTGTGTTCAGAGCATAAAGATCCTGTCATCCGCTGAAGTACAGCAGATGAGCTTGGATGGAAATTTGGGTCACATTCAGGCTCCTAATCAAGCTTGCAGCGGGACGGATAGCGGAAATGCATGGAGAGGGCAGTATGATGACAACTCGGCTGCGTCGTTCAATCGGTGA 3459 46.0 MKAPSNGFMANSGEGERKNMNSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKDADFIPNYPNLSSKLICMLHNVTLHADLETDEVYAQMTLQPVNKYEKEALLASDIGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHENSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWFGDDFGMKDAPSSIFPGLSLVQWMSMQPSNQFPAAQSGILPSMVAPGALHGTLTNDDPSKLLSFQTPVLSSPNLQFGKANQQNQVAQLPATTWSQQQQLQQLLQVPASQQLQQQLPPQQELQQQQQQQQQSQQQQLQSQQLPQQQQLQSQQLPQQQQLQSQQLPQQQLQSQQLTQQPQLQSQQLPQQQPQRQQQTSQPALLNNGVAAANHLSNQSLQQPLVYAQLQQQQQQLLAGNLQSHQTSQPSNKNSFQTTSLSQETQFQPQIEQQPSLLSRHQQQAQFQQAPLQLLQQSLTQRTQQPPQVQQFSQPIPSEQLQLQLLQKLQQQQQLQQPLLSQASPLLPPQLIQQQHVHPQNQQLPPLPLSNQPQFNSSGGSFQTEKLNSNGFSSLGLMQSQQVPITQSHNQFKPTTAIKAYSGLTDGDAPSCSTSPSTNNCQVSVSNLLNKNQQGAAVLGGDSVVEPAANLAQDLQSKPDLRIKHEFPSSKGLDQLKYKGTVPDQLEASSSGTSYCLDAGTIQQTFPLPTCLDNDVQSHPRNSIPFSNSIDGLTPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKPSCSNDVNVNEAGALSGGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYKEYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFNR 1152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12209425 12224575 - Sed0014000.2 Sed03g1843 707330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1843 1152 Gene3D - 124 227 IPR015300 -
Sed03g1843 1152 ProSiteProfiles PB1 domain profile. 1025 1118 IPR053793 -
Sed03g1843 1152 MobiDBLite consensus disorder prediction 632 674 - -
Sed03g1843 1152 FunFam Auxin response factor 1020 1114 - -
Sed03g1843 1152 MobiDBLite consensus disorder prediction 1133 1152 - -
Sed03g1843 1152 MobiDBLite consensus disorder prediction 574 593 - -
Sed03g1843 1152 CDD B3_DNA 125 226 IPR003340 GO:0003677(InterPro)
Sed03g1843 1152 Pfam Auxin response factor 252 334 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed03g1843 1152 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Sed03g1843 1152 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677(InterPro)
Sed03g1843 1152 SMART B3_2 126 228 IPR003340 GO:0003677(InterPro)
Sed03g1843 1152 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677(InterPro)
Sed03g1843 1152 Gene3D - 289 360 - -
Sed03g1843 1152 Pfam AUX/IAA family 1022 1112 IPR033389 -
Sed03g1843 1152 FunFam Auxin response factor 124 228 - -
Sed03g1843 1152 SUPERFAMILY CAD & PB1 domains 1038 1103 - -
Sed03g1843 1152 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 1116 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed03g1843 1152 Gene3D - 1020 1114 - -
Sed03g1843 1152 MobiDBLite consensus disorder prediction 746 781 - -
Sed03g1843 1152 FunFam Auxin response factor 289 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1843 Sed-Chr3:12209425 Sed11g0596 Sed-Chr11:7021279 1.30E-233 dispersed
Sed03g1842 Sed-Chr3:12209425 Sed03g1843 Sed-Chr3:12209425 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37900 PF02309 AUX_IAA 1.90E-09 CL0072 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1843 K14486 - csv:101210917 931.398