Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1846 ATGGAATCGGAGGACGAGCTCGACATGCACGATGCCCACGACGACGAGGACTCTGTTGACAATGAGGAGGATTTCTACAGTGGCGGCGACGATGATGCTGCTGCCGCCGCCGCCGCCATCGACAGCGACGACGCTGATGTCGGCGATTACGAGTTTGTTGATAATGATTCCGATGATTCCGATGATATGGTCTCCTATCGTCACCAGCAAAACTATATAATCTTGGCTGAGGCAGATATACGGCAGCGACAGGATGAGGACATCATGAGAATATCAACTGTTCTTTCTATTTCTAAAGTAGCAGCTAGCATCTTGCTTCGATATTACAGCTGGAGTGTTAGTAAAGTGCACGATGAATGGTTTGCAGATGAAGAAAAGGTTCGTAGAGCTGTTGGCTTATTAGAAAAACCAATTTTGCGTCATTCAAATGATGTAGAGCTACCTTGTGGTATATGTTTTGATATCTATTCACGTGATAAGATTCAGTCTGCTGCTTGTGGCCACCCCTTTTGCAATACATGTTGGACAGGTTATATTAGCACATCTATCAACGATGGTCCAGGATGTCTTGTGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTGGCCTCTGACGATGACAAAAAAAAGTACTTCCGCTATTTTGTTCGCTCCTATGTTGAAGACAATCGTAAGACCAAATGGTGCCCCGCTCCAGGTTGTGATTATGCTGTGGATTTCATAGTTGGAAGTGGAAGCTATGATGTTACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCTAGATGGATTTTGAAGAATAGTGCCGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCAAAATGCAAACGGCCTATTGAGAAAAATCAAGGGTGTATGCATATTACTTGTACTCCACCATGTAAATTTGAGTTCTGCTGGCTTTGTCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCTTTGGAGAGGTACACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCTAGGCAAAAGGCACTTGCAGATCTCCATCAAATGCAAACCGTGCATCTGGAAACTTTAAGTAATATTCAGTGCCAACCTGAGTCTCAGCTAAAGTTCATTAGCGAAGCATGGCTACAGATTGTAGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCCGAGCGTGAACATGCCAAGAGACAGTTCTTCGAGTACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAGTGTGCAGAAAAGGAGTTGCAAGTGTACCTAAATGCGCCTGATGGTCCTTCAAAAGATTTTAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAAAATTTAGTACGTGCGCTTGAGAATGGTCTGTCGGATGTGGATTCCCATGGTACCTGCAGCAGAACAGCAAGCTCAAAGAGTACTGGTGGCTGTAGGAGTAAAGGTGGAAAAGGGAAGATGAGCGTATTCAGAGGTAGTGGTTCAAGTCGAACCATTGATGATACTGATCATTGGTCTTGTGAGCATTGCACCTTTGCAAATGGCAGGTCAGCTACCTTCTGCCAAATGTGCCAGCAACGACGATAA 1803 44.37 MESEDELDMHDAHDDEDSVDNEEDFYSGGDDDAAAAAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIRQRQDEDIMRISTVLSISKVAASILLRYYSWSVSKVHDEWFADEEKVRRAVGLLEKPILRHSNDVELPCGICFDIYSRDKIQSAACGHPFCNTCWTGYISTSINDGPGCLVLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLETLSNIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELQVYLNAPDGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSRTASSKSTGGCRSKGGKGKMSVFRGSGSSRTIDDTDHWSCEHCTFANGRSATFCQMCQQRR 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12283806 12305592 - Sed0009108.1 Sed03g1846 707333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1846 600 Pfam IBR domain, a half RING-finger domain 218 280 IPR002867 GO:0008270(InterPro)
Sed03g1846 600 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 58 408 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Sed03g1846 600 SMART zf_4 575 599 IPR001876 -
Sed03g1846 600 MobiDBLite consensus disorder prediction 1 29 - -
Sed03g1846 600 ProSitePatterns Zinc finger RanBP2-type signature. 577 596 IPR001876 -
Sed03g1846 600 FunFam RBR-type E3 ubiquitin transferase 281 532 - -
Sed03g1846 600 SUPERFAMILY RING/U-box 146 227 - -
Sed03g1846 600 FunFam RBR-type E3 ubiquitin transferase 143 232 - -
Sed03g1846 600 ProSiteProfiles TRIAD supradomain profile. 145 358 IPR044066 -
Sed03g1846 600 MobiDBLite consensus disorder prediction 536 550 - -
Sed03g1846 600 Gene3D - 276 532 - -
Sed03g1846 600 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 230 IPR013083 -
Sed03g1846 600 MobiDBLite consensus disorder prediction 536 569 - -
Sed03g1846 600 Pfam IBR domain 302 342 - -
Sed03g1846 600 Pfam Zinc finger, C3HC4 type (RING finger) 149 185 IPR018957 GO:0046872(InterPro)
Sed03g1846 600 CDD BRcat_RBR_ANKIB1 225 289 - -
Sed03g1846 600 Pfam Ariadne domain 367 530 IPR045840 -
Sed03g1846 600 SUPERFAMILY RING/U-box 299 347 - -
Sed03g1846 600 ProSiteProfiles Zinc finger RING-type profile. 149 193 IPR001841 -
Sed03g1846 600 CDD RING-HC_ARI6-like 146 207 - -
Sed03g1846 600 SUPERFAMILY RING/U-box 219 287 - -
Sed03g1846 600 ProSiteProfiles Zinc finger RanBP2 type profile. 573 600 IPR001876 -
Sed03g1846 600 MobiDBLite consensus disorder prediction 1 42 - -
Sed03g1846 600 SUPERFAMILY Ran binding protein zinc finger-like 573 600 IPR036443 -
Sed03g1846 600 CDD Rcat_RBR_ARI7-like 303 357 - -
Sed03g1846 600 SMART ibrneu5 284 354 IPR002867 GO:0008270(InterPro)
Sed03g1846 600 SMART ibrneu5 218 280 IPR002867 GO:0008270(InterPro)
Sed03g1846 600 Gene3D - 572 600 - -
Sed03g1846 600 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 82 121 IPR048962 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1846 Sed-Chr3:12283806 Sed09g0427 Sed-Chr9:4287179 1.20E-246 dispersed
Sed03g1846 Sed-Chr3:12283806 Sed07g0043 Sed-Chr7:697464 5.80E-257 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1846 K11968 - csv:101218052 1164.44