Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1846 ATGGAATCGGAGGACGAGCTCGACATGCACGATGCCCACGACGACGAGGACTCTGTTGACAATGAGGAGGATTTCTACAGTGGCGGCGACGATGATGCTGCTGCCGCCGCCGCCGCCATCGACAGCGACGACGCTGATGTCGGCGATTACGAGTTTGTTGATAATGATTCCGATGATTCCGATGATATGGTCTCCTATCGTCACCAGCAAAACTATATAATCTTGGCTGAGGCAGATATACGGCAGCGACAGGATGAGGACATCATGAGAATATCAACTGTTCTTTCTATTTCTAAAGTAGCAGCTAGCATCTTGCTTCGATATTACAGCTGGAGTGTTAGTAAAGTGCACGATGAATGGTTTGCAGATGAAGAAAAGGTTCGTAGAGCTGTTGGCTTATTAGAAAAACCAATTTTGCGTCATTCAAATGATGTAGAGCTACCTTGTGGTATATGTTTTGATATCTATTCACGTGATAAGATTCAGTCTGCTGCTTGTGGCCACCCCTTTTGCAATACATGTTGGACAGGTTATATTAGCACATCTATCAACGATGGTCCAGGATGTCTTGTGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTGGCCTCTGACGATGACAAAAAAAAGTACTTCCGCTATTTTGTTCGCTCCTATGTTGAAGACAATCGTAAGACCAAATGGTGCCCCGCTCCAGGTTGTGATTATGCTGTGGATTTCATAGTTGGAAGTGGAAGCTATGATGTTACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCTAGATGGATTTTGAAGAATAGTGCCGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCAAAATGCAAACGGCCTATTGAGAAAAATCAAGGGTGTATGCATATTACTTGTACTCCACCATGTAAATTTGAGTTCTGCTGGCTTTGTCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCTTTGGAGAGGTACACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCTAGGCAAAAGGCACTTGCAGATCTCCATCAAATGCAAACCGTGCATCTGGAAACTTTAAGTAATATTCAGTGCCAACCTGAGTCTCAGCTAAAGTTCATTAGCGAAGCATGGCTACAGATTGTAGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCCGAGCGTGAACATGCCAAGAGACAGTTCTTCGAGTACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAGTGTGCAGAAAAGGAGTTGCAAGTGTACCTAAATGCGCCTGATGGTCCTTCAAAAGATTTTAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAAAATTTAGTACGTGCGCTTGAGAATGGTCTGTCGGATGTGGATTCCCATGGTACCTGCAGCAGAACAGCAAGCTCAAAGAGTACTGGTGGCTGTAGGAGTAAAGGTGGAAAAGGGAAGATGAGCGTATTCAGAGGTAGTGGTTCAAGTCGAACCATTGATGATACTGATCATTGGTCTTGTGAGCATTGCACCTTTGCAAATGGCAGGTCAGCTACCTTCTGCCAAATGTGCCAGCAACGACGATAA 1803 44.37 MESEDELDMHDAHDDEDSVDNEEDFYSGGDDDAAAAAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIRQRQDEDIMRISTVLSISKVAASILLRYYSWSVSKVHDEWFADEEKVRRAVGLLEKPILRHSNDVELPCGICFDIYSRDKIQSAACGHPFCNTCWTGYISTSINDGPGCLVLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLETLSNIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELQVYLNAPDGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSRTASSKSTGGCRSKGGKGKMSVFRGSGSSRTIDDTDHWSCEHCTFANGRSATFCQMCQQRR 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12283806 12305592 - Sed0009108.1 Sed03g1846 707333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1846 600 Pfam IBR domain, a half RING-finger domain 218 280 IPR002867 GO:0008270(InterPro)
Sed03g1846 600 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 58 408 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Sed03g1846 600 SMART zf_4 575 599 IPR001876 -
Sed03g1846 600 MobiDBLite consensus disorder prediction 1 29 - -
Sed03g1846 600 ProSitePatterns Zinc finger RanBP2-type signature. 577 596 IPR001876 -
Sed03g1846 600 FunFam RBR-type E3 ubiquitin transferase 281 532 - -
Sed03g1846 600 SUPERFAMILY RING/U-box 146 227 - -
Sed03g1846 600 FunFam RBR-type E3 ubiquitin transferase 143 232 - -
Sed03g1846 600 ProSiteProfiles TRIAD supradomain profile. 145 358 IPR044066 -
Sed03g1846 600 MobiDBLite consensus disorder prediction 536 550 - -
Sed03g1846 600 Gene3D - 276 532 - -
Sed03g1846 600 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 230 IPR013083 -
Sed03g1846 600 MobiDBLite consensus disorder prediction 536 569 - -
Sed03g1846 600 Pfam IBR domain 302 342 - -
Sed03g1846 600 Pfam Zinc finger, C3HC4 type (RING finger) 149 185 IPR018957 GO:0046872(InterPro)
Sed03g1846 600 CDD BRcat_RBR_ANKIB1 225 289 - -
Sed03g1846 600 Pfam Ariadne domain 367 530 IPR045840 -
Sed03g1846 600 SUPERFAMILY RING/U-box 299 347 - -
Sed03g1846 600 ProSiteProfiles Zinc finger RING-type profile. 149 193 IPR001841 -
Sed03g1846 600 CDD RING-HC_ARI6-like 146 207 - -
Sed03g1846 600 SUPERFAMILY RING/U-box 219 287 - -
Sed03g1846 600 ProSiteProfiles Zinc finger RanBP2 type profile. 573 600 IPR001876 -
Sed03g1846 600 MobiDBLite consensus disorder prediction 1 42 - -
Sed03g1846 600 SUPERFAMILY Ran binding protein zinc finger-like 573 600 IPR036443 -
Sed03g1846 600 CDD Rcat_RBR_ARI7-like 303 357 - -
Sed03g1846 600 SMART ibrneu5 284 354 IPR002867 GO:0008270(InterPro)
Sed03g1846 600 SMART ibrneu5 218 280 IPR002867 GO:0008270(InterPro)
Sed03g1846 600 Gene3D - 572 600 - -
Sed03g1846 600 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 82 121 IPR048962 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1846 K11968 - - csv:101218052 1164.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1846 Sed-Chr3:12283806 Sed09g0427 Sed-Chr9:4287179 1.20E-246 dispersed
Sed03g1846 Sed-Chr3:12283806 Sed07g0043 Sed-Chr7:697464 5.80E-257 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed05g3636 . 164 589 ARIADNE family AT4G34370 71.5 9.8e-182 634.0
Sed01g0314 . 164 589 ARIADNE family AT4G34370 70.3 1.4e-180 630.2
Sed01g0316 . 164 543 ARIADNE family AT4G34370 75.5 1.1e-175 614.0
Sed01g0315 . 164 542 ARIADNE family AT4G34370 75.5 5.2e-175 611.7
Sed05g3636 . 58 542 ARIADNE family AT2G16090 76.6 1.2e-223 773.5
Sed01g0316 . 58 544 ARIADNE family AT2G16090 76.5 7.6e-223 770.8
Sed01g0314 . 58 542 ARIADNE family AT2G16090 76.6 2.2e-222 769.2
Sed01g0315 . 58 542 ARIADNE family AT2G16090 76.6 2.2e-222 769.2
Sed05g3636 . 36 543 ARIADNE family AT3G27710 61.0 1.1e-182 637.5
Sed01g0314 . 37 543 ARIADNE family AT3G27710 60.7 2.7e-181 632.9
Sed01g0316 . 37 543 ARIADNE family AT3G27710 60.7 2.7e-181 632.9
Sed01g0315 . 37 542 ARIADNE family AT3G27710 60.7 1.0e-180 630.9
Sed01g0314 . 44 523 ARIADNE family AT3G27720 54.3 9.3e-144 508.1
Sed01g0315 . 44 523 ARIADNE family AT3G27720 54.3 9.3e-144 508.1
Sed01g0316 . 44 523 ARIADNE family AT3G27720 54.3 9.3e-144 508.1
Sed05g3636 . 44 522 ARIADNE family AT3G27720 54.2 2.7e-143 506.5
Sed07g0043 . 56 530 ARIADNE family AT1G05890 73.5 4.8e-219 758.4
Sed03g1846 . 66 545 ARIADNE family AT1G05890 71.9 1.4e-218 756.9
Sed09g0427 . 57 524 ARIADNE family AT1G05890 73.9 5.8e-217 751.5
Sed03g1846 . 41 600 ARIADNE family AT1G65430 75.4 5.9e-259 891.0
Sed07g0043 . 1 583 ARIADNE family AT1G65430 67.4 5.0e-242 834.7
Sed09g0427 . 16 583 ARIADNE family AT1G65430 68.5 2.0e-238 822.8
Sed03g1846 . 53 463 ARIADNE family AT2G31780 56.2 3.1e-146 516.2
Sed07g0043 . 53 449 ARIADNE family AT2G31780 57.6 2.4e-143 506.5
Sed09g0427 . 55 449 ARIADNE family AT2G31780 56.7 6.6e-141 498.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72