Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1848 ATGGCCATGGCTATGGCCCATCACAGAGAGAGTGGCGATGGGGGTATCAATGGCCACCTTGACAGCACCGGGAAGTACGTCCGTTACACGGCCGAGCAAGTCGAAGCTCTCGAGCGAGTTTATGCAGAATGTCCAAAACCGAGCTCCTTGCGCCGCCAGCAGCTGGTTCGGGATTGCCCCATTTTGGCCAATATCGAGCCAAAGCAGATCAAAGTCTGGTTCCAGAACCGCAGGTGTAGAGAAAAACAGAGAAAAGAGGCTTGTCGTATACAATCACTGAATAGTAAATTGACGGCCATGAATAAGCTGTTGATGGAGGAGAATGATAGGTTGCAGAAACAAGTATCTCAGCTTGTCTGTGTAAATGGGTATATGCGACAACATTTGCAAACTGCTAATGCACCAGCAGCAACAACTACTGATGCAAGTCGCGACTCAGTGGCTACTACCTCTCAGCATTCACTTAGAGATTCTAGTAGTCCTGCTGGACTTCTGTCTATTGCAGAGGAGATTTTGGCAGCCTTTCTGTCAAAGGCTACTGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGTTGGGAATCTTCGCCATTTCACAAAGTTGCAGTGGAGTGGCTGCACGAGCCTGTGGTCTTGTCAGTTTAGAGCCCATGAAGATTGCAGAGATCCTAAAGGATCGTCCATCTTGGTTTCGTGATTGCCGGAGCCTTGAAGTCTTTACAATGTTTCCCACTGGTAATGGCGGGACAATCGAACTTGTTTATACCCAGGTTTATGCTCCCACCACTTTAGCATCTGCACGGGATTTTTGGACTCTAAGATACACCAAAACTTTGGAAAATGGCAATCTTGTGGTTTGTGAGAGATCACTGTCCGGATCTGAATCTGGGCCTAATGCACCTTCTGCTGCTCAGTTTGTGAGAACCGAAATGCTTCCCAGTGGCTATTTGATTCGTCCATGCGATGGTGGAGGCTCGATCATCCACATTGTAGATCACCTAAATCTTGAGCCTTGGAGTGTGCCAGAGGTAGTACGTCCACTTTACGAATCATCAAAGGCTGTTGCTCAGAAAATGACTATAGCAGCTCTTCGCTACGTCAGGCAAATCGCTCAAGAGACAAGTGGTGAAGTAGTATACAGTTTAGGTAGACAACCGGCTGTTCTTCGAACTTTTAGCCAAAGATTGAGCAGAGGGTTTAATGATGCTGTCAATGGATTTAATGATGATGGATGGTCTTTAATCAATTGTGATGGAGCTGAAGATGTGACCCTGGCCATAAATTCAAGCAAGAATTTAAATACATCATATGATCCAGTCAACCCTCTTGCATTTCATGGGGGGGTCCTTTGTGCTAAGGCTTCCATGCTTCTCCAAAATGTTTCTCCCATTGCTCTAATCCGATTCTTGAGGGAGCATCGTTCTGAGTGGGCTGATTTCAATGTCGATGCCTATTCTGCTGCGTCATTGAAAACTGGTTCATATACATACCCGGGCATGAGACCGACCAGGTTTACAGGAAGCCAAATCATCATGCCACTCGGCCATACAATCGAACAAGAAGAGTTGCTTGAAGTTGTAAGGCTTGAGAGCCACCCTCTTGCTCAAGAAGATGCTTTTGTGTCCCGGGACGTTCATTTGTTGCAGATGTGTACTGGAATCGGTGAGAATGCTATCGGGGCGTGTTCGGAACTTGTGTTTGCTCCTATCGATGAGATGTTTCCTGATAATGCTGTGCTGCTGCCTTCTGGTTTCAGGATCCTCCCATTGCGTTCTGGAACAGGTGACTCAAAAGATACATGGAACTCAAATAGGACTCTGGATCTCACTTCCAGTCTTGAAGTTGGCTCATCTGCTACTCAAGATGCTGCCGCATCAACATCTAACTTCAGATCGGTTTTGACTATCGCCTTCCAATTCCCTTTCGGCAGCAACCTGCAGGATGATGTTGCAGCGATGGCTCGGCAGTATGTTCGGAGTGTCGTTTCGGCTGTGCAGAGGGTTGCAGTTGCCATAACTCCCTCTGGACTAAGCTCGCCATCGAAATCAAAGCTATCATCTGCTTGCCCAGAAGCCCTTACCCTGGCTAGGTGGATCTGCCATAGCTACAGATGCCATACTGGAACAGAATTGGTGCCATCAGACGGAGTGGACGGTGACACAGTGTTGAAACATCTATGGAATCATCAGGATGCAATTCTCTGCTGTTCCCTCAAGTCCCTGCCCCCGGTGTTCATGTTTGCAAACCAAGCAGGCCTCGACATGTTGGAGACGACCTTCGTTGCCTTACAAGACATCACTTTGGATAAGATTCTCAGCAACTCTGCGCATAAGGCTTTCTCTGCTGATTTTTCCAATTTAATGCACCAGGGCTTTGCTTACATGCCTGCTGGAGTATGCTTGTCGACAATGCAGCGCCATGCTTCCTTCGAACAAGCCATTGCATGGAAGGTTCTTGCAGAAGACGAGTCTACTGTGCACTGTCTCGCCTTCTCCTTCGTCAACTGGTCCTTCCTGTGA 2538 47.87 MAMAMAHHRESGDGGINGHLDSTGKYVRYTAEQVEALERVYAECPKPSSLRRQQLVRDCPILANIEPKQIKVWFQNRRCREKQRKEACRIQSLNSKLTAMNKLLMEENDRLQKQVSQLVCVNGYMRQHLQTANAPAATTTDASRDSVATTSQHSLRDSSSPAGLLSIAEEILAAFLSKATGTAVDWVQMPGMKPGPDSLGIFAISQSCSGVAARACGLVSLEPMKIAEILKDRPSWFRDCRSLEVFTMFPTGNGGTIELVYTQVYAPTTLASARDFWTLRYTKTLENGNLVVCERSLSGSESGPNAPSAAQFVRTEMLPSGYLIRPCDGGGSIIHIVDHLNLEPWSVPEVVRPLYESSKAVAQKMTIAALRYVRQIAQETSGEVVYSLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLINCDGAEDVTLAINSSKNLNTSYDPVNPLAFHGGVLCAKASMLLQNVSPIALIRFLREHRSEWADFNVDAYSAASLKTGSYTYPGMRPTRFTGSQIIMPLGHTIEQEELLEVVRLESHPLAQEDAFVSRDVHLLQMCTGIGENAIGACSELVFAPIDEMFPDNAVLLPSGFRILPLRSGTGDSKDTWNSNRTLDLTSSLEVGSSATQDAAASTSNFRSVLTIAFQFPFGSNLQDDVAAMARQYVRSVVSAVQRVAVAITPSGLSSPSKSKLSSACPEALTLARWICHSYRCHTGTELVPSDGVDGDTVLKHLWNHQDAILCCSLKSLPPVFMFANQAGLDMLETTFVALQDITLDKILSNSAHKAFSADFSNLMHQGFAYMPAGVCLSTMQRHASFEQAIAWKVLAEDESTVHCLAFSFVNWSFL 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12332652 12344658 - Sed0001110.1 Sed03g1848 707335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1848 845 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
Sed03g1848 845 CDD START_ArGLABRA2_like 161 377 - -
Sed03g1848 845 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
Sed03g1848 845 Pfam START domain 167 375 IPR002913 GO:0008289(InterPro)
Sed03g1848 845 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
Sed03g1848 845 SUPERFAMILY Homeodomain-like 23 86 IPR009057 -
Sed03g1848 845 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
Sed03g1848 845 SMART START_1 166 376 IPR002913 GO:0008289(InterPro)
Sed03g1848 845 Pfam MEKHLA domain 700 844 IPR013978 -
Sed03g1848 845 CDD bZIP 77 116 - -
Sed03g1848 845 Coils Coil 90 114 - -
Sed03g1848 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 845 IPR044830 GO:0003700(InterPro)
Sed03g1848 845 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
Sed03g1848 845 Gene3D - 203 383 IPR023393 -
Sed03g1848 845 MobiDBLite consensus disorder prediction 132 159 - -
Sed03g1848 845 SUPERFAMILY Bet v1-like 166 378 - -
Sed03g1848 845 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289(InterPro)
Sed03g1848 845 Gene3D - 19 89 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1848 Sed-Chr3:12332652 Sed11g0724 Sed-Chr11:11107502 0.00E+00 dispersed
Sed03g1848 Sed-Chr3:12332652 Sed14g1615 Sed-Chr14:24352331 1.4e-313 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37901 PF01852 START 1.00E-46 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1848 K09338 - csv:101215773 1315.83