Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1864 ATGTCTCGTAGAGGCGGTGGTGCTGGTCGTGGCTCTGGAGGTCGAGGAGGACAGCCGTCTCCGGCGTTTCATAGCGGCGGCGGCGGCGGTGGCGGAAGAGGCGGCGGAAGAGGAAGAGGTGGCAGAGGCGGCGGCCGGGGAGGACAACCGGCTCCTGAACAGTTTCCTTCCCTCACTCCTCAACCAACTCCCCCTGTTCCTCGTCCTCTTCCCCAGACTTCAACGACGGTAGCTTCTTCTTCTTCTTCTTCATCATCTGGAATTACTGCTCCATCGCAGTCACAGGCATCTTCTTCGAAGATCGTGCCACAGATGGAGAAGCTGACATTGGCGCCGACGCCGGCGCCGGCTCCAACGCCAGAGAAAGTTCCGCCGTCTTCATCGAAGGATCTGGCAGTGGCGAAGAGGCCGGGATTTGGAACCTTAGGGAACAAAGTCGTCGTTCGGGCTAATCATTTTCTTGTTAAAGTTGCGGATCACGATCTCTACCACTATGATATTTCCATAACACCTGATGTAAATTCGAAGAAGGTTTGCCGGGATATCATAGGCCAGTTAGTGAAAATGTACAGAGAATCGCACTTAGGAGGAAGGTATTTAGCTTATGATGGAGGAAAGAGCGTTTATGTTGCTGGAGAACTTCCGTTTTCTTCAAAGGTGTTCGCGATCAAACTCCTCCGTGAAGAAGATATTAAAACTTCCAAACCAGCCAAGAAAGAACGGGTGTTCAATGTAACTGTGAAGTTTGCATCGAGGCCGGATCTCCATCATCTGCAGCAGTTTCTACAAAGAAAACAGCGAGATGCTCCTCAAGAAACTATCCAACTTCTTGACGTTGTTCTGAGAACAAATCCGTCTTTCAAGTATACCGTTGTGGGAAGGTCATTCTTCTCTACTGATTTTGGAAATCCGGGTGAACTTGGTAATGGCGTTGAGTATTGGAGGGGATATTATCAAAGTCTACGCCCTGTACAGATGGGTCTATCTCTGAATATTGATGTATCGGCTAGATCGTTTTATGAGCCAATCAATGTGACAGACTTTGTTGTCAAACACTTCAATCTAAGAAATCTCTCAAGGCCATTGTCGGATCAGGACATTCGGAGGATAAAAAAAGTACTGAAGGGGGTGAAGGTGGCAGTAACATATAGGGAGACTTCCAGGACTTACAAAATTACTGGGATATCATCACTGCCTGTTAACAAATTAATGTTTACTCTTGAAGAGCAGAGAACACGAATTTCTGTTGCACAATACTTTCAAGATACATATGGTGTTGCTCTCAAATGTCCGTTTCTCCCAGCGCTTCAAGCGGGCAATGATGCAAAGCCTATCTACTTGCCTATGGAGGTTTGCATGATTGTTAAGGGCCAGCGATATACTAAGAAATTAAATGAACGCCAAGTAACTGAGATGCTAAGAGCGACTTGTCAGAGACCTGGTGAAAGACAAAGGAGTATAGAGAAGACTGTTGATAGGAATGGATATTCTAATGATCTAATTGTTGCGGACTTTGGCATTGAAGTTAACAAAAGGTTATGTGATATCGATGCTAGAGTTTTGCCACCTCCAAGGCTCAAATATCATGAATCAGGGAAGGAGTCAAGAGTTGACCCATGGATGGGTCAATGGAATATGATTAATAAGAAAATGATCAATGGTGGGAAAGTTGACACATGGGGATGTGTTAACTTCTCATCACGATTGGATCCACGCTTGCCTTCTGAATTTTGCTATCAGTTAGTTTCCATGTGCACCAGCAAAGGAATGGCTTTCAACCCTAATCCGGTGTTTCCGGTCCGTGCTGCACATGCAAACCAAATTGAAAGTACATTAAGGGAAATTCATAGTCTGTGTGTTAAAAATTTGGGACCACAGGGCAAGTCTCTTCAGTTGCTCATTATTATTTTACCTGATATTACTGGTTCATATGGAAAGATCAAGCGGATATGTGAGACCGAACTTGGAATTGTTTCTCAGTGTTGCCAGCCTCGACAGGCACAGAAGATGAATAAACAATACTTTGAGAACGTGTCCCTCAAAATCAATGTCAAGGTTGGGGGAAGAAATAATGTCCTAAGTGATGCTATTCAGCGCAATATTCCACTTCTGACTGATAAACCTACTATCATCTTTGGAGCTGATGTTACACATCCTCAACCAGGAGAGGACACGAGTCCTTCGATTGCGGCGGTTGTTGCCTCAATGGACTGGCCCGAGGTAACCAAGTATAGAGGTATTGTATCAGCTCAAGCTCATCGCGAAGAAATTATTCAAGATCTTTATTCTCAAATTCAAGATCCTCAGAGAGGCGTGGTGCATTCTGGGATGATTAGGGAGCTGTTCATTGCTTACCGAAGGGCCACGAACATGAAACCGCATAGAATAATATTCTATAGAGATGGTGTCAGCGAAGGTCAGTTTAGTCAAGTCTTGCTCTATGAGATGGATGCAATCAGGAAGGCATGTGAATCCCTTGAAGCGGGATACCAACCGCGTGTAACCTTTATAGTGGTTCAAAAGAGGCATCACACTCGTCTTTTCCCCACTACTCAGGATACAGACCGGAGTGGAAACATTCTTCCAGGTACTGTTGTTGATACGAAAATCTGCCATCCTACTGAATTTGATTTCTATTTGAACAGCCATGCTGGCATCCAGGGAACAAGTAGACCGACTCACTATCATGTTCTGTATGATGAGAACAATTTTAGTGCAGATCAAATGCAAACACTCACGAATAATCTTTGCTACACTTATGCAAGGTGTACACGCTCTGTCTCCATTGTTCCACCTGCATACTACGCCCATCTAGCAGCATTTCGTGCTCGCTATTACATGGAGAGTGATGCATCTGATACCGGTTCCACGAATTCGGGAGGTGGGAATGTAGAGATTCAGGCCTTGCCCAAAATCAAAGAGAATGTGAAGGATGTCATGTTTTACTGTTGA 2952 45.02 MSRRGGGAGRGSGGRGGQPSPAFHSGGGGGGGRGGGRGRGGRGGGRGGQPAPEQFPSLTPQPTPPVPRPLPQTSTTVASSSSSSSSGITAPSQSQASSSKIVPQMEKLTLAPTPAPAPTPEKVPPSSSKDLAVAKRPGFGTLGNKVVVRANHFLVKVADHDLYHYDISITPDVNSKKVCRDIIGQLVKMYRESHLGGRYLAYDGGKSVYVAGELPFSSKVFAIKLLREEDIKTSKPAKKERVFNVTVKFASRPDLHHLQQFLQRKQRDAPQETIQLLDVVLRTNPSFKYTVVGRSFFSTDFGNPGELGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYEPINVTDFVVKHFNLRNLSRPLSDQDIRRIKKVLKGVKVAVTYRETSRTYKITGISSLPVNKLMFTLEEQRTRISVAQYFQDTYGVALKCPFLPALQAGNDAKPIYLPMEVCMIVKGQRYTKKLNERQVTEMLRATCQRPGERQRSIEKTVDRNGYSNDLIVADFGIEVNKRLCDIDARVLPPPRLKYHESGKESRVDPWMGQWNMINKKMINGGKVDTWGCVNFSSRLDPRLPSEFCYQLVSMCTSKGMAFNPNPVFPVRAAHANQIESTLREIHSLCVKNLGPQGKSLQLLIIILPDITGSYGKIKRICETELGIVSQCCQPRQAQKMNKQYFENVSLKINVKVGGRNNVLSDAIQRNIPLLTDKPTIIFGADVTHPQPGEDTSPSIAAVVASMDWPEVTKYRGIVSAQAHREEIIQDLYSQIQDPQRGVVHSGMIRELFIAYRRATNMKPHRIIFYRDGVSEGQFSQVLLYEMDAIRKACESLEAGYQPRVTFIVVQKRHHTRLFPTTQDTDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENNFSADQMQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYMESDASDTGSTNSGGGNVEIQALPKIKENVKDVMFYC 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12502384 12509549 - Sed0001076.1 Sed03g1864 707351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1864 983 SUPERFAMILY PAZ domain 339 496 IPR036085 GO:0005515(InterPro)
Sed03g1864 983 MobiDBLite consensus disorder prediction 55 71 - -
Sed03g1864 983 Gene3D paz domain 337 460 - -
Sed03g1864 983 ProSiteProfiles PAZ domain profile. 344 456 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed03g1864 983 FunFam protein argonaute 10-like 700 983 - -
Sed03g1864 983 CDD PAZ_argonaute_like 342 455 - -
Sed03g1864 983 Pfam Argonaute linker 2 domain 482 528 IPR032472 -
Sed03g1864 983 MobiDBLite consensus disorder prediction 72 104 - -
Sed03g1864 983 Pfam Mid domain of argonaute 539 616 IPR032473 -
Sed03g1864 983 Gene3D - 700 983 IPR036397 GO:0003676(InterPro)
Sed03g1864 983 CDD Piwi_ago-like 501 947 IPR045246 -
Sed03g1864 983 Pfam Piwi domain 634 947 IPR003165 GO:0003676(InterPro)
Sed03g1864 983 FunFam Argonaute 10 520 694 - -
Sed03g1864 983 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 136 970 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Sed03g1864 983 ProSiteProfiles Piwi domain profile. 632 948 IPR003165 GO:0003676(InterPro)
Sed03g1864 983 SMART Piwi_a_2 632 948 IPR003165 GO:0003676(InterPro)
Sed03g1864 983 Pfam PAZ domain 366 473 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed03g1864 983 SMART PAZ_2_a_3 345 478 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed03g1864 983 Gene3D - 520 694 - -
Sed03g1864 983 Pfam N-terminal domain of argonaute 145 281 IPR032474 -
Sed03g1864 983 Pfam Argonaute linker 1 domain 292 341 IPR014811 -
Sed03g1864 983 SUPERFAMILY Ribonuclease H-like 628 948 IPR012337 -
Sed03g1864 983 SMART DUF1785_2 290 342 IPR014811 -
Sed03g1864 983 MobiDBLite consensus disorder prediction 1 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1864 Sed-Chr3:12502384 Sed08g2037 Sed-Chr8:34619182 1.80E-300 dispersed
Sed03g1864 Sed-Chr3:12502384 Sed03g1865 Sed-Chr3:12502384 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1864 K11593 - csv:116403995 1469.91