Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1890 ATGGTTTCAATTTTGGAATTAGTAGACTCCAATCTCCCCTCCACCATCTCCTTAATCTTCTTCTCCTTCACAGCTGTGTTCTGTGTGTTCTCCTTGTGTCTATACATCCTCCGGTTAAAGCCCTGCTGCAACTGCCCTCTGTGCCGCTCGTATTTGTCGTCGTCATGGTCGGGGAGCTTCCCGAACCTATCGGACTGGTACACGGACCTGCTGGGGCAGTCCCCGACGGGCACGATCCACGTCCACGTGCTGTCGAACATCGTAACGGCGAACCCGGACAACGTCCAACACATCCTCAAAACAAACTTCTCCAACTACCCCAAAGGCAAGCCTTTTTCCTCCATCCTGGGGGACCTTCTGGGGCAAGGCATATTCAACGTGGATGGACACTCTTGGCTCTTCCAGCGCAAGATGGCTAGCTTGGAGCTCGGCAGCCTCTCCGTCCGCTCCCACGCCTTCCGCATCCTCACCGCCAACCTCCGCACCCGCCTCCTTCCTCTCCTCTCCTCTCGGCATGCCTTGGACTTGCAGGATGTGTTTAGGCGCTTTTCCTTCGATAATATTTGTAACTTCTCCTTCGGCTTGGACCCGGGGTGCTTGAGGCTCTGCCTTCCGGTTTCCGACTTTGCGGTTGCCTTTGACATGGCCTCGCGCCTCTCCGCGGAGAGGGCCATCGCCCCCTCTCCCCTCACGTGGAAGCTTAAGCGCCTCTTTCGAATCGGGTCCGAGAGGAAGCTCAGAGAGGCTATTGACATGGTCAATCATCTTGCTATGCAAGTGATTACGCAGCGTAGAGACATTGGATTCTCTCATCGCAATGATCTTCTCTCCAGATTCATGGCCTCCACTCTTGATGATCGATATCTCCGAGACATTGTGGTGAGCTTCCTCCTCGCCGGTCGGGACACGGTGGCATCGGCGTTGACCAGTCTCTTCTGGCTTTTGTCTCAGAACCCCCACGTGGAGGACCAAATTCTCTCCGAGTCGGACCGGATCATGGGACCGGACCGGGATGCGGTTCCCACTTACGACGATCTAAGAGAAATGCAGTACCTTCACGCGGCGGTCTACGAGAACATGCGCCTCTTCCCGCCGGTTCAGTTCGACTCCAAATTCGCCGAGGAAGACGACATCCTACCCGACGGCACGTTTGTCCAGAAGGGTACAAGGGTAACTTACCACCCCTACGCCATGGGCCGGATGGACCGGATTTGGGGGCCCGACTGTCTCCAATTCAAACCGGACAGATGGCTCAAGAGTGGCTGCTTCGCGCCAGAAAACCCCTTCAAGTTTCCGGTTTTCCAGGCCGGGTTGAGGGTCTGTTTGGGCAAGGAGCTCGCCGTGTTGGACGTGAAATGCGTTGCGGTGACGTTGATTCGGAAGTTTGAGATTCGGTTGGATGGAGTCGACCGGGTCGCCCGGTTCGCTCCCGGTCTGACGGCTACCTGGAGAGGCGGGTTGCCGGTTCGAATTCAAGAAAGAACCCGTGTTGAGCCGAAATTGGTTTCGGTTTAA 1515 56.11 MVSILELVDSNLPSTISLIFFSFTAVFCVFSLCLYILRLKPCCNCPLCRSYLSSSWSGSFPNLSDWYTDLLGQSPTGTIHVHVLSNIVTANPDNVQHILKTNFSNYPKGKPFSSILGDLLGQGIFNVDGHSWLFQRKMASLELGSLSVRSHAFRILTANLRTRLLPLLSSRHALDLQDVFRRFSFDNICNFSFGLDPGCLRLCLPVSDFAVAFDMASRLSAERAIAPSPLTWKLKRLFRIGSERKLREAIDMVNHLAMQVITQRRDIGFSHRNDLLSRFMASTLDDRYLRDIVVSFLLAGRDTVASALTSLFWLLSQNPHVEDQILSESDRIMGPDRDAVPTYDDLREMQYLHAAVYENMRLFPPVQFDSKFAEEDDILPDGTFVQKGTRVTYHPYAMGRMDRIWGPDCLQFKPDRWLKSGCFAPENPFKFPVFQAGLRVCLGKELAVLDVKCVAVTLIRKFEIRLDGVDRVARFAPGLTATWRGGLPVRIQERTRVEPKLVSV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12820473 12823379 - Sed0006105.1 Sed03g1890 707377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1890 504 SUPERFAMILY Cytochrome P450 61 494 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1890 504 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1890 504 PRINTS P450 superfamily signature 432 441 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1890 504 PRINTS P450 superfamily signature 299 316 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1890 504 PRINTS P450 superfamily signature 441 452 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1890 504 PANTHER CYTOCHROME P450 33 486 - -
Sed03g1890 504 Gene3D Cytochrome P450 53 502 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1890 504 CDD CYP86A 75 487 - -
Sed03g1890 504 Pfam Cytochrome P450 85 470 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1890 504 PRINTS E-class P450 group I signature 431 441 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1890 504 PRINTS E-class P450 group I signature 308 334 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1890 504 PRINTS E-class P450 group I signature 288 305 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1890 504 PRINTS E-class P450 group I signature 441 464 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0545 Sed-Chr2:43006251 Sed03g1890 Sed-Chr3:12820473 1.30E-169 dispersed
Sed03g1890 Sed-Chr3:12820473 Sed08g0036 Sed-Chr8:169980 2.10E-114 dispersed
Sed03g1890 Sed-Chr3:12820473 Sed03g1893 Sed-Chr3:12891524 2.10E-74 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1890 K20624 - csv:101207724 816.609