Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1891 ATGGAAGAAGAAAACATCTTATGTGATCTTCAATCCCCAACTTTCATAGAATGGCTTAAACCACACAACCCTCTCTCTTTTTCCTCATCTCCTTCCATTTCTCTCTCCTCTTCGTCTTCGTCTTCCTCCGACCGCGATTTGATCCCTAGAACCGTCCAATGTGTGACCGGGGCAATTCCCAAAAATGATCTTTTTGTATCCCGATGCCTGCCTTTGTTCTCCGAGAGCGAGGCCGGGGCGAAGAAGGAAGAAGAAGGGGTTCGAGTGAAAGAGGAGGATGAAGATATGGAGAAAGTTGAAGTGGGATTGCAAATTGGGCTTCCAAATGTTGGTGATGTCTCTAATTTGGGTGATAAAAACATGAATGTTTGTGTAAAGAAAGAAGAAATTACGAGTGTGAAGAAAAGTTTGTCTAATTTCAACACTCAAGGAAGGTTTTGGATCCCAACGCCGGCTCAGATCCTTGTTGGTCCGATGCAATTTGCTTGCTCCATTTGTAACAAGTCTTTTAATAGATACAATAACATGCAGATGCACATGTGGGGGCATGGATCGGAGTACCGAAAAGGCCCGGCATCCCTTCGAGGAACACAGCCAGCCGCAATGCTGCGGCTTCCATGCTATTGCTGCGCTCCGGGGTGCAAGAACAACATCAACCATCCAAGAGCGAAGCCATTGAAGGACTTTAGAACTCTCCAAACACACTACAAAAGAAAGCATGGATCCAAGCCATTTGTGTGCAGAAAATGTGGCAAAACTTTAGCTGTGAAAGGAGATTGGAGAACCCATGAAAAGAATTGTGGAAAGCTTTGGTATTGCATTTGTGGCTCAGATTTCAAACACAAACGCTCCCTTAAAGATCACATCAAATCATTTGGCAAAGGCCACTCTCCAATCTGCACTCTTGATGACTTTGAACAAGATGAGTTCCCTCATTAA 939 44.41 MEEENILCDLQSPTFIEWLKPHNPLSFSSSPSISLSSSSSSSSDRDLIPRTVQCVTGAIPKNDLFVSRCLPLFSESEAGAKKEEEGVRVKEEDEDMEKVEVGLQIGLPNVGDVSNLGDKNMNVCVKKEEITSVKKSLSNFNTQGRFWIPTPAQILVGPMQFACSICNKSFNRYNNMQMHMWGHGSEYRKGPASLRGTQPAAMLRLPCYCCAPGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFVCRKCGKTLAVKGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKSFGKGHSPICTLDDFEQDEFPH 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12862451 12865380 - Sed0019103.1 Sed03g1891 707378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1891 312 ProSiteProfiles Zinc finger C2H2 type domain profile. 161 188 IPR013087 -
Sed03g1891 312 SMART c2h2final6 161 183 IPR013087 -
Sed03g1891 312 SMART c2h2final6 245 265 IPR013087 -
Sed03g1891 312 SUPERFAMILY beta-beta-alpha zinc fingers 157 184 IPR036236 -
Sed03g1891 312 SUPERFAMILY beta-beta-alpha zinc fingers 227 265 IPR036236 -
Sed03g1891 312 ProSitePatterns Zinc finger C2H2 type domain signature. 163 183 IPR013087 -
Sed03g1891 312 Gene3D Classic Zinc Finger 160 183 - -
Sed03g1891 312 PANTHER ZINC FINGER PROTEIN WIP2 68 308 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Sed03g1891 312 Gene3D Classic Zinc Finger 208 299 - -
Sed03g1891 312 FunFam Zinc finger protein WIP2 214 296 - -
Sed03g1891 312 Pfam Zinc finger, C2H2 type 161 180 IPR013087 -
Sed03g1891 312 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 244 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1891 Sed-Chr3:12862451 Sed12g1232 Sed-Chr12:8757416 2.10E-85 dispersed
Sed03g1891 Sed-Chr3:12862451 Sed05g1132 Sed-Chr5:11349122 3.00E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37904 PF13912 zf-C2H2_6 6.10E-05 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1891 - - - 0.0