Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed03g1893 | ATGACAATTAGTACATTGATATTAGGATTGTACAGTTCAAAACACATAGTGTTGGGAATTGCAGCATGTTTGGTTGGGACATGGATCATTGTTCATAGAATTAAATCATGGTCCCAAAAGAACAAGACAGGCCCCAAAACATGGCCACTGGTAGGAGCAGCAATAGAACAGTTGGTGAATTACCATAGAATGCATGATTGGCTTCTTGGTTACTTCAATGTCTTTAAAACTGTTGTTGTTCCTATGCCTTTCACTACTTATACTTACATTGCTGACCCTGCCAATGTTCAGCATGTTCTCAAGACCAACTTTGCCAATTATCCTAAGGGTGAAGTATATCATTCGTACATGGAAGTCCTTCTTGGAGATGGAATTTTCAACGTAGATGGAGAGCTGTGGAGAAAGCAAAGGAAAACTGCTAGCTTTGAATTTGCATCAAAGAATTTGAGGGATTTCAGTACCATAGTTTTCAGAAACTACACTCTCAAGCTCTCCGATATTTTAACTCGAGCGTCCGTAGACAAACGACAGGTTGACATGCAAGAATTGTTGATGAGAATGACATTGGATTCAATATGCAAGGTGGGATTTGGAGTTGAAATAGGATCATTGGCTCCAAATTTGCCAGAAAATAGATTTGCCAAAGCTTTTGACACAGCCAATATCATTGTCACTCTTCGTTTTATTGATCCTTTGTGGAGAATTAAAAGATTTCTTAATTTGGGATCTGAAGCTCTTCTTCATAAGTCCATCCAAATCATAGATAATTTTACTTATTCTGTTATTGCCACTAGGAAAAAGGAGATCACCCAACAGCTTCCAAAAACAGATCATCATGCCAATAATAAGATCAAACACGATATCTTGTCGAGATTTATCGAGTTAGGCAAAGACCCAGACAACAATTTCACAGACAAAAGCTTAAGAGATGTTGTACTAAACTTTGTGATTGCTGGACGTGACACAACAGCAGCCACTCTCTCATGGGCTATTTACATGGTAATGACCAATTCTCAAGTAGCTGACAAACTATACACAGAGCTAAAGAATTTTGAACAAGAAAGAGCCAAAGAAGAGAAAGTTTCACTAATTCCAAATCATTCAACTGATGATGTTCAATCCTTTGAGAAAAGAGTGATGCAGTTTGCACAACTTCTCAATTATGATTCACTTACAAGATTGCATTATTTGCATGCTGTGATCACTGAGACACTTCGTCTTTACCCTGCAGTCCCTCAGGATCCAAAGGGGATTTTGGAGGATGATGTGTTGCCAGATGGGACAAAGGTAAGAGCAGGTGGAATGGTGACATATGTTCCTTACTCAATGGGAAGAATGGAATACAATTGGGGCTCTGATGCTGCTTCTTTTAACCCTGAAAGATGGCTCAAACAAGGCATTTTTCATGCTGAATCTCCTTTCAAGTTCACAGCTTTCCAGGCTGGACCAAGGATCTGCATGGGGAAAGACTCTGCATATCTACAGATGAAAATGGCTGTTGCCATTTTGTGCAGGTTCTACAAATTTACTTTGGTGTGTGGTCATCAAGTCAACTACAGAATGATGACTATTCTCTCCATGACCAATGGCTTGAAAGTTACAGTTTCAAGAAATTCTTAA | 1620 | 39.01 | MTISTLILGLYSSKHIVLGIAACLVGTWIIVHRIKSWSQKNKTGPKTWPLVGAAIEQLVNYHRMHDWLLGYFNVFKTVVVPMPFTTYTYIADPANVQHVLKTNFANYPKGEVYHSYMEVLLGDGIFNVDGELWRKQRKTASFEFASKNLRDFSTIVFRNYTLKLSDILTRASVDKRQVDMQELLMRMTLDSICKVGFGVEIGSLAPNLPENRFAKAFDTANIIVTLRFIDPLWRIKRFLNLGSEALLHKSIQIIDNFTYSVIATRKKEITQQLPKTDHHANNKIKHDILSRFIELGKDPDNNFTDKSLRDVVLNFVIAGRDTTAATLSWAIYMVMTNSQVADKLYTELKNFEQERAKEEKVSLIPNHSTDDVQSFEKRVMQFAQLLNYDSLTRLHYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVRAGGMVTYVPYSMGRMEYNWGSDAASFNPERWLKQGIFHAESPFKFTAFQAGPRICMGKDSAYLQMKMAVAILCRFYKFTLVCGHQVNYRMMTILSMTNGLKVTVSRNS | 539 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 12891524 | 12896495 | - | Sed0010015.1 | Sed03g1893 | 707380 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed03g1893 | 539 | FunFam | Alkane hydroxylase MAH1 | 38 | 539 | - | - | |
| Sed03g1893 | 539 | PANTHER | CYTOCHROME P450 | 28 | 531 | - | - | |
| Sed03g1893 | 539 | Gene3D | Cytochrome P450 | 28 | 539 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g1893 | 539 | PRINTS | E-class P450 group I signature | 486 | 509 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g1893 | 539 | PRINTS | E-class P450 group I signature | 307 | 324 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g1893 | 539 | PRINTS | E-class P450 group I signature | 476 | 486 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g1893 | 539 | PRINTS | E-class P450 group I signature | 398 | 416 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g1893 | 539 | PRINTS | E-class P450 group I signature | 327 | 353 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g1893 | 539 | Coils | Coil | 341 | 361 | - | - | |
| Sed03g1893 | 539 | CDD | CYP86A | 76 | 531 | - | - | |
| Sed03g1893 | 539 | Pfam | Cytochrome P450 | 44 | 531 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g1893 | 539 | SUPERFAMILY | Cytochrome P450 | 34 | 536 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g1893 | 539 | PRINTS | P450 superfamily signature | 318 | 335 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g1893 | 539 | PRINTS | P450 superfamily signature | 399 | 410 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g1893 | 539 | PRINTS | P450 superfamily signature | 477 | 486 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g1893 | 539 | PRINTS | P450 superfamily signature | 486 | 497 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed02g1627 | Sed-Chr2:51642719 | Sed03g1893 | Sed-Chr3:12891524 | 2.30E-66 | dispersed | |
| Sed03g1893 | Sed-Chr3:12891524 | Sed04g2239 | Sed-Chr4:36137951 | 2.60E-99 | dispersed | |
| Sed03g1890 | Sed-Chr3:12820473 | Sed03g1893 | Sed-Chr3:12891524 | 2.10E-74 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed03g1893 | K20495 | - | csv:101222076 | 862.062 |