Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1894 ATGGATCCGCCCACTCTGATGAACCAACAGCACCCATTTCCTAACTCCGCCAATCCCAATGCGGCGCCGCCCTTCAATCTCCCTGAGATCTGGCCCTTCCCGATTCATCCCGGAACCCCCGTTGACGAATCTGGCACCGGCTTCGCTCTGAAGATGCCTCACTTCCCTCACAATTTGGGCCACTTTGGAGACATTTCTATGGCGGATCCTGTCAGCTTGCCATTGCACCACAGAGTTGTAGCTCGTGGCCATGGCGCTGCCAAGAAGCGGCGGGATGTAGAGATGGATTCGGCTAAGCTCAGTCCCACTGGCAATAGCGGCGGGATGAATGACTGTGGTGGAAAACGCCCTAAAACAGCAGTGTGTAGAGATGATAATCATGAATCTAAAACAGAAGCAGAACCCAGATCTGGCAAGGCCGACCAGAACTCCCAGCCCCCACAAGAACACCCCAAACAGGATTATATCCATGTGCGAGCAAGAAGGGGTCAAGCAACTGATAGCCATAGTTTGGCAGAAAGGGCTAGAAGGGAAAAGATAAGTGAGAGAATGAAAGTTCTTCAGGATTTGGTCCCTGGGTGTAATAAGGTCATTGGAAAAGCACTTGTACTTGATGAGATAATTAATTACATTCAATCGCTTCAGGGTCAGGTTGAGTTCTTGTCGATGAAGCTTGAAGCAGTTAATTCGAGAGTTAGTCCTGGCATTGAAGTATTTCCTCCTAAAGATTATGGTCAACAAACATTCGATACAACTGGGGTTGCATTTAGTTCACAAGCAACAAGAGAATACAGCCGTGGTTCATCCCCAGAATGGCTACATATGCAGATCGGCGGCGGTTTCGAAAGAACGGCATAG 858 49.07 MDPPTLMNQQHPFPNSANPNAAPPFNLPEIWPFPIHPGTPVDESGTGFALKMPHFPHNLGHFGDISMADPVSLPLHHRVVARGHGAAKKRRDVEMDSAKLSPTGNSGGMNDCGGKRPKTAVCRDDNHESKTEAEPRSGKADQNSQPPQEHPKQDYIHVRARRGQATDSHSLAERARREKISERMKVLQDLVPGCNKVIGKALVLDEIINYIQSLQGQVEFLSMKLEAVNSRVSPGIEVFPPKDYGQQTFDTTGVAFSSQATREYSRGSSPEWLHMQIGGGFERTA 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12901700 12904717 - Sed0012769.1 Sed03g1894 707381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1894 285 MobiDBLite consensus disorder prediction 1 21 - -
Sed03g1894 285 Coils Coil 211 231 - -
Sed03g1894 285 Gene3D - 161 234 IPR036638 GO:0046983(InterPro)
Sed03g1894 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 214 IPR011598 GO:0046983(InterPro)
Sed03g1894 285 MobiDBLite consensus disorder prediction 1 16 - -
Sed03g1894 285 FunFam Basic helix-loop-helix transcription factor 161 233 - -
Sed03g1894 285 Pfam Helix-loop-helix DNA-binding domain 168 215 IPR011598 GO:0046983(InterPro)
Sed03g1894 285 CDD bHLH_AtBPE_like 154 239 - -
Sed03g1894 285 SMART finulus 170 220 IPR011598 GO:0046983(InterPro)
Sed03g1894 285 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 93 246 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed03g1894 285 MobiDBLite consensus disorder prediction 117 137 - -
Sed03g1894 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 231 IPR036638 GO:0046983(InterPro)
Sed03g1894 285 MobiDBLite consensus disorder prediction 83 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1894 Sed-Chr3:12901700 Sed12g1916 Sed-Chr12:30294831 4.20E-56 dispersed
Sed03g1894 Sed-Chr3:12901700 Sed08g0184 Sed-Chr8:1019787 4.10E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37905 PF00010 HLH 3.50E-08 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1894 - - - 0.0