Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1936 | ATGTCGACCGAGAGACTGATTCGCAGTGGAGCGGCTCCGTCGGAAGCAGAGCTGCCGCATTCGTCTCGGCAATGTGGAGATACGGGTAGGGTTTTCGAGGAGCTTCCGATAGCTTCCATCGTATCGGTTTCGCGGCTGGATACTGGAGATATCAGTCCCTTGCTCTTGTCCTACACTATTGGAATCCAATACAAACAGTTTAAATGGAGCTTAGTGAAGAAAGCATCACAAGTTCTTTATTTACATTTTGCATTGAAGAAACGCGCATTTATGGAAGATCTTCATGATAAACAAGAGCAGGTGAAAGAATGGCTTCACAACTTGGGAATAGGAGACCATACAGCAGTAGTTCATCATGATGAGGAATCTGATGATGGGGCTTTTCCTCTGCATGATGAACAAGCTACAAGAAACAGGAATGTTCCTTCCATGGCTGCTTTACCCATCATTAAGTCAGCGCTGGGAGGACAGGGGTCCATTTCAGACAAGGCAAAGCTAGCAATGCAGGGTTACCTAAATCACTTTTTTGGGAACTTGGATATTGTGAATTCTCGTGAGGTCTGCAAATTCTTAGAAGTCTCCAAGTTGTCATTTGTGAAAGAATATGGTCCAAAGTTGAAAGAAGGCTACCTAATGGTGAAGCATTTGAAACAACTCATAGGATCTGATTCTAGTGTAAAATGCTTTGCATGTCATTGGTGCAGTTGCTGCCAAAACAATTGGAAAAAGGTTTGGGCTGTTTTGAAACCAGGTTTCTTGGCCTTGGTTGCTGATCCTCTGGACACTAAACTCCTAGATATAATCCTTTTTGATGTGCTACCAACATTAGAAGAAAAGGAGGGATCCCAAGCATGCTTAGCTTATCATGTCAAGGAGCACAACCCTTTACGTTTTTCATTTATGGTTAGATGCGGAAATGGGAACATGAAGTTCAGAACCACAAGTACTGCCAAAGTTAAAAAGTGGGTCTCATCAATTAATGAAGCTGTTCTTGGACCCCAAGATGGCTGGTGCCATCCTCATCGCTTTGGTTCGTTTGCTCCTCAGAGAGGTTTGGCTGGTGATGAAAGCCAAGCTCAGTGGTTCATCGATGGCCGGGCAGCTTTCGAAGCAATCGCTTGCTCTATTGAAGCTGCAAAATCAGAGATTTTCATAACTGGTTGGTGGCTTTGCCCCGAGCTTTATATGCGACGCCCTTTTTACAATCATTCTTCTTCACGGCTTGATGAATTATTGGAAACAAAGGCAAAAGAAGGTGTCAAGATTTACATCTTAATGTATAAGGAGGTTCCTATTGCTTTGAAAATTAACAGTATGTATAGTAAGAAGAAGCTTCTTAATATTCATGAGAATATTAAGGTACTACGTTCTCCTGATCATATGTCAACCGGGATTTACTATTGGTCACATCACGAAAAACTTGTCATCGTTGATCACCGCATTTGCTTCATTGGAGGTTTGGATTTATGCTTTGGACGTTATGATACAATGGAACATAAAGTGAGTGATTTCCCTCCTTATACGTGGCCAGGAAAGGACTATTACAACCCAAGAGAATCTGAACCAAATTCTTGGGAGGACACAATGAAAGATGAACTGGAGCGGGAGAAGTGTCCTCGAATGCCGTGGCACGATGTTCACTGTGCTCTGTGGGGATCTCCATGCCGTGATATTGCTCGACACTTTGTTCAGAGGTGGAACCATGCTAAGAGAAACAAAGCTCCAAATGAAGAAAAAATACCTCTACTAATGCCTCAACATCACATGGTCCTTCCACATTACATGGGAAAAAGCACGGAGTCGAGCTTTAAAAATGAAGACTCGGAGCAAGATCATCAGAAGCAGACTACAGAAGATTTATTTTCCTCCTTATCACCACAGGAAGATATTCCATTACTTATGCCTCAGGAAGTTGGTGGACTTCCAAATTCTAACATGGAAACAAATAGCCTTTCCATGAATCGCAATTTTTTCGATAAGCCCATGGTGATACAAAAAAGTGATGTGGATTCTTTCCAGTACAATGTTGAACCATTGACCCAATATGAAGAAACAAATGGATTGTTAGATGACTTTGGATTTTTGGATGAGTTTGGTGATGCTCCGGCGTATATGAAAACTTCAGGCGATTGGTTAGAAACTGAACATGAAACCAATCATGTAGTTGCATTAAACGTGGTCAAGGAAATTGGTCCTCTTGCTACTAGCAATTGTCAGGTGATTAGAAGTGTCAGCCAATGGTCAGCTGGAACAAGCAAACCAGAAGCAAGTATCCATGCCGCCTATTGTTCTGCCATTCAAGACGCGAAACACTTCATTTACATTGAGAACCAGTTTTTTATATCAGGCTTATCAGGGGATGAGACCATACAGAATCGGGTTCTTGAAGCACTATACCAACGTATATTACTGGCTCATAAAGAACAAGAATGTTTTCGAGTTATTGTTGTTTTACCTCTCTTACCTGGATTTCAGGGTGGGCTAGATGATAATGGTGCAGCAACTGTTCGAGCCTTGATGCACTGGCAGTATCGAACTGTTAGTTGGGAAAAAACTTCCATTTTGCACTGTCTCAATCTTTTACTGGGTCCTAAAGCACAAGATTATATATCGTTTTGTGGGCTTCGATCGTATGGAAGACTTTTTGATGGTGGTCCAATTGCCACAAGTCAGATATATGTGCACAGCAAATTGATGATTATCGATGATTGCATTACATTTATTGGCTCTTCAAATATTAACGATAGAAGTCTACTTGGATCCAGAGATTCTGAGATTGGGGTAATTATTGAGGATAAAGAGTTTGTTGATTCATCTATGAATGGAAAGCCTTGGAAGGCTGGAAAATTCGCTCATAGTCTACGTTGCTCGTTGTGGTGTGAGCACCTCGGTCTTCATCTCGGAGAGGTTAGTCAAATCATTGACCCTATAGTGGAAGCAACGTACAAAGATTTGTGGTTAGCTACGGCAAAGGAAAACACAACAATATATGAAGATGTATTTTCTTGCCTCCCCAATGACAACATAAACTCAAGGTCGTCTTTACGCCAAAGTTTGGCCGACTGGAAGGGGAAAATTGGCCATAACTCAATAGATTTAGGAATAGCTGCTGAGAAGATAGAAAGGTATGAGAATGGTGAAGTAAAAAAGGTAGATCCAATGGAGAGACTGAAATGGATTAGAGGACATCTTGTCTGTTTCCCATTGAGGTTCATGTGGCAACAAGACCTTAGACCAGGCTTCATTGAGAGTGAGTTTTATGCTGCCCCTCAAGTTTTTCATTGA | 3285 | 41.67 | MSTERLIRSGAAPSEAELPHSSRQCGDTGRVFEELPIASIVSVSRLDTGDISPLLLSYTIGIQYKQFKWSLVKKASQVLYLHFALKKRAFMEDLHDKQEQVKEWLHNLGIGDHTAVVHHDEESDDGAFPLHDEQATRNRNVPSMAALPIIKSALGGQGSISDKAKLAMQGYLNHFFGNLDIVNSREVCKFLEVSKLSFVKEYGPKLKEGYLMVKHLKQLIGSDSSVKCFACHWCSCCQNNWKKVWAVLKPGFLALVADPLDTKLLDIILFDVLPTLEEKEGSQACLAYHVKEHNPLRFSFMVRCGNGNMKFRTTSTAKVKKWVSSINEAVLGPQDGWCHPHRFGSFAPQRGLAGDESQAQWFIDGRAAFEAIACSIEAAKSEIFITGWWLCPELYMRRPFYNHSSSRLDELLETKAKEGVKIYILMYKEVPIALKINSMYSKKKLLNIHENIKVLRSPDHMSTGIYYWSHHEKLVIVDHRICFIGGLDLCFGRYDTMEHKVSDFPPYTWPGKDYYNPRESEPNSWEDTMKDELEREKCPRMPWHDVHCALWGSPCRDIARHFVQRWNHAKRNKAPNEEKIPLLMPQHHMVLPHYMGKSTESSFKNEDSEQDHQKQTTEDLFSSLSPQEDIPLLMPQEVGGLPNSNMETNSLSMNRNFFDKPMVIQKSDVDSFQYNVEPLTQYEETNGLLDDFGFLDEFGDAPAYMKTSGDWLETEHETNHVVALNVVKEIGPLATSNCQVIRSVSQWSAGTSKPEASIHAAYCSAIQDAKHFIYIENQFFISGLSGDETIQNRVLEALYQRILLAHKEQECFRVIVVLPLLPGFQGGLDDNGAATVRALMHWQYRTVSWEKTSILHCLNLLLGPKAQDYISFCGLRSYGRLFDGGPIATSQIYVHSKLMIIDDCITFIGSSNINDRSLLGSRDSEIGVIIEDKEFVDSSMNGKPWKAGKFAHSLRCSLWCEHLGLHLGEVSQIIDPIVEATYKDLWLATAKENTTIYEDVFSCLPNDNINSRSSLRQSLADWKGKIGHNSIDLGIAAEKIERYENGEVKKVDPMERLKWIRGHLVCFPLRFMWQQDLRPGFIESEFYAAPQVFH | 1094 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 13444452 | 13454229 | + | Sed0006408.1 | Sed03g1936 | 707423 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1936 | 1094 | SUPERFAMILY | Phospholipase D/nuclease | 729 | 938 | - | - | |
Sed03g1936 | 1094 | SUPERFAMILY | PH domain-like | 199 | 331 | - | - | |
Sed03g1936 | 1094 | CDD | PLDc_vPLD1_2_yPLD_like_2 | 750 | 934 | - | - | |
Sed03g1936 | 1094 | MobiDBLite | consensus disorder prediction | 598 | 619 | - | - | |
Sed03g1936 | 1094 | Gene3D | Endonuclease Chain A | 704 | 951 | - | - | |
Sed03g1936 | 1094 | SMART | PH_update | 205 | 333 | IPR001849 | - | |
Sed03g1936 | 1094 | CDD | PH_PLD | 182 | 329 | - | - | |
Sed03g1936 | 1094 | SMART | pld_4 | 890 | 917 | IPR001736 | GO:0003824(InterPro) | |
Sed03g1936 | 1094 | SMART | pld_4 | 466 | 493 | IPR001736 | GO:0003824(InterPro) | |
Sed03g1936 | 1094 | SUPERFAMILY | Phospholipase D/nuclease | 324 | 585 | - | - | |
Sed03g1936 | 1094 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Sed03g1936 | 1094 | Pfam | Phospholipase D Active site motif | 468 | 493 | IPR001736 | GO:0003824(InterPro) | |
Sed03g1936 | 1094 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 890 | 917 | IPR001736 | GO:0003824(InterPro) | |
Sed03g1936 | 1094 | MobiDBLite | consensus disorder prediction | 600 | 616 | - | - | |
Sed03g1936 | 1094 | PANTHER | PHOSPHOLIPASE D | 185 | 1072 | IPR015679 | GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER) | |
Sed03g1936 | 1094 | FunFam | Phospholipase | 724 | 944 | - | - | |
Sed03g1936 | 1094 | Pfam | PLD-like domain | 892 | 937 | IPR025202 | - | |
Sed03g1936 | 1094 | CDD | PLDc_vPLD1_2_yPLD_like_1 | 359 | 503 | - | - | |
Sed03g1936 | 1094 | Gene3D | - | 199 | 332 | IPR011993 | - | |
Sed03g1936 | 1094 | ProSiteProfiles | PH domain profile. | 204 | 331 | IPR001849 | - | |
Sed03g1936 | 1094 | PIRSF | PLD_euk | 693 | 1094 | IPR016555 | GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro) | |
Sed03g1936 | 1094 | PIRSF | PLD_euk | 37 | 626 | IPR016555 | GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro) | |
Sed03g1936 | 1094 | Gene3D | Endonuclease Chain A | 350 | 617 | - | - | |
Sed03g1936 | 1094 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 466 | 493 | IPR001736 | GO:0003824(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1936 | Sed-Chr3:13444452 | Sed04g1775 | Sed-Chr4:32375482 | 0.00E+00 | dispersed | |
Sed03g1936 | Sed-Chr3:13444452 | Sed09g0264 | Sed-Chr9:2120718 | 0.00E+00 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1936 | K01115 | - | csv:101220522 | 1968.74 |