Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1936 ATGTCGACCGAGAGACTGATTCGCAGTGGAGCGGCTCCGTCGGAAGCAGAGCTGCCGCATTCGTCTCGGCAATGTGGAGATACGGGTAGGGTTTTCGAGGAGCTTCCGATAGCTTCCATCGTATCGGTTTCGCGGCTGGATACTGGAGATATCAGTCCCTTGCTCTTGTCCTACACTATTGGAATCCAATACAAACAGTTTAAATGGAGCTTAGTGAAGAAAGCATCACAAGTTCTTTATTTACATTTTGCATTGAAGAAACGCGCATTTATGGAAGATCTTCATGATAAACAAGAGCAGGTGAAAGAATGGCTTCACAACTTGGGAATAGGAGACCATACAGCAGTAGTTCATCATGATGAGGAATCTGATGATGGGGCTTTTCCTCTGCATGATGAACAAGCTACAAGAAACAGGAATGTTCCTTCCATGGCTGCTTTACCCATCATTAAGTCAGCGCTGGGAGGACAGGGGTCCATTTCAGACAAGGCAAAGCTAGCAATGCAGGGTTACCTAAATCACTTTTTTGGGAACTTGGATATTGTGAATTCTCGTGAGGTCTGCAAATTCTTAGAAGTCTCCAAGTTGTCATTTGTGAAAGAATATGGTCCAAAGTTGAAAGAAGGCTACCTAATGGTGAAGCATTTGAAACAACTCATAGGATCTGATTCTAGTGTAAAATGCTTTGCATGTCATTGGTGCAGTTGCTGCCAAAACAATTGGAAAAAGGTTTGGGCTGTTTTGAAACCAGGTTTCTTGGCCTTGGTTGCTGATCCTCTGGACACTAAACTCCTAGATATAATCCTTTTTGATGTGCTACCAACATTAGAAGAAAAGGAGGGATCCCAAGCATGCTTAGCTTATCATGTCAAGGAGCACAACCCTTTACGTTTTTCATTTATGGTTAGATGCGGAAATGGGAACATGAAGTTCAGAACCACAAGTACTGCCAAAGTTAAAAAGTGGGTCTCATCAATTAATGAAGCTGTTCTTGGACCCCAAGATGGCTGGTGCCATCCTCATCGCTTTGGTTCGTTTGCTCCTCAGAGAGGTTTGGCTGGTGATGAAAGCCAAGCTCAGTGGTTCATCGATGGCCGGGCAGCTTTCGAAGCAATCGCTTGCTCTATTGAAGCTGCAAAATCAGAGATTTTCATAACTGGTTGGTGGCTTTGCCCCGAGCTTTATATGCGACGCCCTTTTTACAATCATTCTTCTTCACGGCTTGATGAATTATTGGAAACAAAGGCAAAAGAAGGTGTCAAGATTTACATCTTAATGTATAAGGAGGTTCCTATTGCTTTGAAAATTAACAGTATGTATAGTAAGAAGAAGCTTCTTAATATTCATGAGAATATTAAGGTACTACGTTCTCCTGATCATATGTCAACCGGGATTTACTATTGGTCACATCACGAAAAACTTGTCATCGTTGATCACCGCATTTGCTTCATTGGAGGTTTGGATTTATGCTTTGGACGTTATGATACAATGGAACATAAAGTGAGTGATTTCCCTCCTTATACGTGGCCAGGAAAGGACTATTACAACCCAAGAGAATCTGAACCAAATTCTTGGGAGGACACAATGAAAGATGAACTGGAGCGGGAGAAGTGTCCTCGAATGCCGTGGCACGATGTTCACTGTGCTCTGTGGGGATCTCCATGCCGTGATATTGCTCGACACTTTGTTCAGAGGTGGAACCATGCTAAGAGAAACAAAGCTCCAAATGAAGAAAAAATACCTCTACTAATGCCTCAACATCACATGGTCCTTCCACATTACATGGGAAAAAGCACGGAGTCGAGCTTTAAAAATGAAGACTCGGAGCAAGATCATCAGAAGCAGACTACAGAAGATTTATTTTCCTCCTTATCACCACAGGAAGATATTCCATTACTTATGCCTCAGGAAGTTGGTGGACTTCCAAATTCTAACATGGAAACAAATAGCCTTTCCATGAATCGCAATTTTTTCGATAAGCCCATGGTGATACAAAAAAGTGATGTGGATTCTTTCCAGTACAATGTTGAACCATTGACCCAATATGAAGAAACAAATGGATTGTTAGATGACTTTGGATTTTTGGATGAGTTTGGTGATGCTCCGGCGTATATGAAAACTTCAGGCGATTGGTTAGAAACTGAACATGAAACCAATCATGTAGTTGCATTAAACGTGGTCAAGGAAATTGGTCCTCTTGCTACTAGCAATTGTCAGGTGATTAGAAGTGTCAGCCAATGGTCAGCTGGAACAAGCAAACCAGAAGCAAGTATCCATGCCGCCTATTGTTCTGCCATTCAAGACGCGAAACACTTCATTTACATTGAGAACCAGTTTTTTATATCAGGCTTATCAGGGGATGAGACCATACAGAATCGGGTTCTTGAAGCACTATACCAACGTATATTACTGGCTCATAAAGAACAAGAATGTTTTCGAGTTATTGTTGTTTTACCTCTCTTACCTGGATTTCAGGGTGGGCTAGATGATAATGGTGCAGCAACTGTTCGAGCCTTGATGCACTGGCAGTATCGAACTGTTAGTTGGGAAAAAACTTCCATTTTGCACTGTCTCAATCTTTTACTGGGTCCTAAAGCACAAGATTATATATCGTTTTGTGGGCTTCGATCGTATGGAAGACTTTTTGATGGTGGTCCAATTGCCACAAGTCAGATATATGTGCACAGCAAATTGATGATTATCGATGATTGCATTACATTTATTGGCTCTTCAAATATTAACGATAGAAGTCTACTTGGATCCAGAGATTCTGAGATTGGGGTAATTATTGAGGATAAAGAGTTTGTTGATTCATCTATGAATGGAAAGCCTTGGAAGGCTGGAAAATTCGCTCATAGTCTACGTTGCTCGTTGTGGTGTGAGCACCTCGGTCTTCATCTCGGAGAGGTTAGTCAAATCATTGACCCTATAGTGGAAGCAACGTACAAAGATTTGTGGTTAGCTACGGCAAAGGAAAACACAACAATATATGAAGATGTATTTTCTTGCCTCCCCAATGACAACATAAACTCAAGGTCGTCTTTACGCCAAAGTTTGGCCGACTGGAAGGGGAAAATTGGCCATAACTCAATAGATTTAGGAATAGCTGCTGAGAAGATAGAAAGGTATGAGAATGGTGAAGTAAAAAAGGTAGATCCAATGGAGAGACTGAAATGGATTAGAGGACATCTTGTCTGTTTCCCATTGAGGTTCATGTGGCAACAAGACCTTAGACCAGGCTTCATTGAGAGTGAGTTTTATGCTGCCCCTCAAGTTTTTCATTGA 3285 41.67 MSTERLIRSGAAPSEAELPHSSRQCGDTGRVFEELPIASIVSVSRLDTGDISPLLLSYTIGIQYKQFKWSLVKKASQVLYLHFALKKRAFMEDLHDKQEQVKEWLHNLGIGDHTAVVHHDEESDDGAFPLHDEQATRNRNVPSMAALPIIKSALGGQGSISDKAKLAMQGYLNHFFGNLDIVNSREVCKFLEVSKLSFVKEYGPKLKEGYLMVKHLKQLIGSDSSVKCFACHWCSCCQNNWKKVWAVLKPGFLALVADPLDTKLLDIILFDVLPTLEEKEGSQACLAYHVKEHNPLRFSFMVRCGNGNMKFRTTSTAKVKKWVSSINEAVLGPQDGWCHPHRFGSFAPQRGLAGDESQAQWFIDGRAAFEAIACSIEAAKSEIFITGWWLCPELYMRRPFYNHSSSRLDELLETKAKEGVKIYILMYKEVPIALKINSMYSKKKLLNIHENIKVLRSPDHMSTGIYYWSHHEKLVIVDHRICFIGGLDLCFGRYDTMEHKVSDFPPYTWPGKDYYNPRESEPNSWEDTMKDELEREKCPRMPWHDVHCALWGSPCRDIARHFVQRWNHAKRNKAPNEEKIPLLMPQHHMVLPHYMGKSTESSFKNEDSEQDHQKQTTEDLFSSLSPQEDIPLLMPQEVGGLPNSNMETNSLSMNRNFFDKPMVIQKSDVDSFQYNVEPLTQYEETNGLLDDFGFLDEFGDAPAYMKTSGDWLETEHETNHVVALNVVKEIGPLATSNCQVIRSVSQWSAGTSKPEASIHAAYCSAIQDAKHFIYIENQFFISGLSGDETIQNRVLEALYQRILLAHKEQECFRVIVVLPLLPGFQGGLDDNGAATVRALMHWQYRTVSWEKTSILHCLNLLLGPKAQDYISFCGLRSYGRLFDGGPIATSQIYVHSKLMIIDDCITFIGSSNINDRSLLGSRDSEIGVIIEDKEFVDSSMNGKPWKAGKFAHSLRCSLWCEHLGLHLGEVSQIIDPIVEATYKDLWLATAKENTTIYEDVFSCLPNDNINSRSSLRQSLADWKGKIGHNSIDLGIAAEKIERYENGEVKKVDPMERLKWIRGHLVCFPLRFMWQQDLRPGFIESEFYAAPQVFH 1094
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13444452 13454229 + Sed0006408.1 Sed03g1936 707423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1936 1094 SUPERFAMILY Phospholipase D/nuclease 729 938 - -
Sed03g1936 1094 SUPERFAMILY PH domain-like 199 331 - -
Sed03g1936 1094 CDD PLDc_vPLD1_2_yPLD_like_2 750 934 - -
Sed03g1936 1094 MobiDBLite consensus disorder prediction 598 619 - -
Sed03g1936 1094 Gene3D Endonuclease Chain A 704 951 - -
Sed03g1936 1094 SMART PH_update 205 333 IPR001849 -
Sed03g1936 1094 CDD PH_PLD 182 329 - -
Sed03g1936 1094 SMART pld_4 890 917 IPR001736 GO:0003824(InterPro)
Sed03g1936 1094 SMART pld_4 466 493 IPR001736 GO:0003824(InterPro)
Sed03g1936 1094 SUPERFAMILY Phospholipase D/nuclease 324 585 - -
Sed03g1936 1094 MobiDBLite consensus disorder prediction 1 24 - -
Sed03g1936 1094 Pfam Phospholipase D Active site motif 468 493 IPR001736 GO:0003824(InterPro)
Sed03g1936 1094 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 890 917 IPR001736 GO:0003824(InterPro)
Sed03g1936 1094 MobiDBLite consensus disorder prediction 600 616 - -
Sed03g1936 1094 PANTHER PHOSPHOLIPASE D 185 1072 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Sed03g1936 1094 FunFam Phospholipase 724 944 - -
Sed03g1936 1094 Pfam PLD-like domain 892 937 IPR025202 -
Sed03g1936 1094 CDD PLDc_vPLD1_2_yPLD_like_1 359 503 - -
Sed03g1936 1094 Gene3D - 199 332 IPR011993 -
Sed03g1936 1094 ProSiteProfiles PH domain profile. 204 331 IPR001849 -
Sed03g1936 1094 PIRSF PLD_euk 693 1094 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Sed03g1936 1094 PIRSF PLD_euk 37 626 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Sed03g1936 1094 Gene3D Endonuclease Chain A 350 617 - -
Sed03g1936 1094 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 466 493 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1936 Sed-Chr3:13444452 Sed04g1775 Sed-Chr4:32375482 0.00E+00 dispersed
Sed03g1936 Sed-Chr3:13444452 Sed09g0264 Sed-Chr9:2120718 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1936 K01115 - csv:101220522 1968.74