Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1939 ATGGGGCATTTCTCCACCATGTTCAATGGATTGGCAAGGTCATTTTCCTTAAGAAAAGGTAGAAGTTCAAGTCTAGGCGACGAGGGAGGGCGAGAAGCTGCGAAAGCCATGGTAAAGGATGCGAAGAAGAAAGACTTGATATTATGCACCTCTGGTGTCCTCAATGCAGAAGGTTCGGATAGTTTTGCTTCGGTGTTCTCGAAGAAAGGCGAAAAAGGCGTAAACCAAGATTGCTGCATTGTATGGGAGGAATTTGGATGCCAAGAAGACATGATATTCTGTGGGATTTTCGATGGCCACGGACAGTGGGGTCATTTTGTTGCGAAAACGGTAAGAGAATCAATGCCGCCATCTTTGCTGTATCATTGGCAGCAAGGACTTGCTCAAGCTTTTCTTGACCCAGAATTGAATTCAGAAAAGAATCATCAGAGATTTGATATATGGAAGCATTCGTATTTAAGAACTTGTGCTGCCATTGATCACGAACTCGAGCAGCATCGGAAAATTGATACGGTTTACAGTGGAACAACTGCCCTGTCCATTATTAAACAGGGCGAACTAGTCATTTTGGCCAACGTCGGTGACTCTCGAGCGGTTTTGGCAACTACTTCAGATGATGGAAGTGTAGTACCAGTTCAGCTCACTGTTGATTTCAAACCGAACCTACCCCAGGAGGCCGAGCGGATAATTCAATGCAATGGGAGGGTGTTTTGTTTAAATGACGAGCCGGGAGTTCATAGAGTCTGGCTTCCAAACGAGGAATCACCCGGATTGGCAATGTCGAGAGCATTTGGTGATTATTGTATTAAAGACTTTGGACTCATTTCAGTGCCAGAAGTGACATGTAGAAGCATAACCAACAGAGACCAATTCATTATATTGGCAACTGATGGGGTATGGGATGTTGTCTCCAATCAAGAAGCAGTGGAGATCGTATCGTCAACACCGGATAGAGCGAAATCGGCTAAACGCCTGGTCCAGTGTGCAGTTCGGGCATGGAAACGAAAGAGGCGAGGCATTGCGATTGATGACATATCAGCTATCTGCCTCTTCTTCCACTCTTCATCAGAGCAAGATGATCACCTTGTATCCACACCATAG 1101 45.41 MGHFSTMFNGLARSFSLRKGRSSSLGDEGGREAAKAMVKDAKKKDLILCTSGVLNAEGSDSFASVFSKKGEKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGQWGHFVAKTVRESMPPSLLYHWQQGLAQAFLDPELNSEKNHQRFDIWKHSYLRTCAAIDHELEQHRKIDTVYSGTTALSIIKQGELVILANVGDSRAVLATTSDDGSVVPVQLTVDFKPNLPQEAERIIQCNGRVFCLNDEPGVHRVWLPNEESPGLAMSRAFGDYCIKDFGLISVPEVTCRSITNRDQFIILATDGVWDVVSNQEAVEIVSSTPDRAKSAKRLVQCAVRAWKRKRRGIAIDDISAICLFFHSSSEQDDHLVSTP 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13478728 13482511 + Sed0024880.1 Sed03g1939 707426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1939 366 Gene3D - 46 355 IPR036457 -
Sed03g1939 366 CDD PP2Cc 62 352 IPR001932 -
Sed03g1939 366 FunFam Probable protein phosphatase 2C 34 53 354 - -
Sed03g1939 366 SUPERFAMILY PP2C-like 59 353 IPR036457 -
Sed03g1939 366 PANTHER PROTEIN PHOSPHATASE 45 351 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed03g1939 366 SMART PP2C_4 51 350 IPR001932 -
Sed03g1939 366 ProSiteProfiles PPM-type phosphatase domain profile. 62 352 IPR001932 -
Sed03g1939 366 Pfam Protein phosphatase 2C 83 329 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1939 Sed-Chr3:13478728 Sed04g0430 Sed-Chr4:3145711 6.70E-139 dispersed
Sed03g1939 Sed-Chr3:13478728 Sed03g1940 Sed-Chr3:13478728 1.40E-216 tandem
Sed11g0391 Sed-Chr11:3739441 Sed03g1939 Sed-Chr3:13478728 3.10E-200 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1939 - - - 0.0