Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1942 ATGGCGTCGAGGAATCGGACTTTTGTTTTCAAGAAATACAGGGACGCGTTGAGGAGTGTGAGGGCCCCTACCAGCTCCTCGCTTGCTTCCGCATCGCCGTCGACTAGTTCCGGCGATGGTGGACCGGTGATTGAAATGGTTAGCTCCTCTCTGTTGCGTCCCAATCAGTCCTACGCTCCATTGAGTACTGAGGATCCCGGTAATTCAAGTAAGGGTGCTCTCACAGTGGGTCTACCTCCGGCTTGGGTGGATGTATCGGAAGAAATAGCTGCAAACGTGCAGCGTGCACGATTGAAGATGGTGGAGTTGGCTAAAGCTCATGCAAAGGCTTTGATGCCTTCATTTGGAGATGGTAAAGAAGATCAACGATTAATTGAGTCTCTCACGCAAGACGTCACTAATTTGATCAAGAAGTCAGAAAAGGGGCTCAAGAGACTCTCTGTAGCTGGACCTTCCGAGGATTCCAATATCAGAAAAAATGTTCAGCGATCTCTTGCCACCGACCTTCAGAACCTTTCCGTGGAGCTTCGCAAGAAACAATCAACTTATTTAAATCGCCTACGGCAGCAAAAAGAGGAAGTTCAAGATGGGATAGACATAGAGATGAATCTAAACGGAAATAGATCGAAAATGGAGGACGATGATTTAGACGACATGGTATTTAACGAGCATCAGATGGCTAAGCTGCGAAAGAGTGAAGCGTTCACTGCCGAAAGAGAGAAAGAGATCCAACATGTTGTGCAATCCGTGAATGAGCTTGCTCAGATCATGAAGGATCTTTCAGTACTCGTCATAGACCAGGGTACCATTATTGATAGAATAGACTACAATATTCAAAATGTTGCAACGACAGTTGACGAGGGCCTTAAGCAACTACAGAAGGCGGAGAAAACACAGAAACAAGGAGGCATGGTAATGTGCGCGAGCGTTCTCATTATCATGTGTTTTGTCATGTTGGTCCTCTTGATCCTTAAAACCATACTATTTTGA 990 45.86 MASRNRTFVFKKYRDALRSVRAPTSSSLASASPSTSSGDGGPVIEMVSSSLLRPNQSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARLKMVELAKAHAKALMPSFGDGKEDQRLIESLTQDVTNLIKKSEKGLKRLSVAGPSEDSNIRKNVQRSLATDLQNLSVELRKKQSTYLNRLRQQKEEVQDGIDIEMNLNGNRSKMEDDDLDDMVFNEHQMAKLRKSEAFTAEREKEIQHVVQSVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLQKAEKTQKQGGMVMCASVLIIMCFVMLVLLILKTILF 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13505885 13509816 + Sed0016078.1 Sed03g1942 707429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1942 329 MobiDBLite consensus disorder prediction 22 45 - -
Sed03g1942 329 Pfam SNARE domain 269 321 IPR000727 -
Sed03g1942 329 SUPERFAMILY t-snare proteins 78 288 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed03g1942 329 ProSitePatterns Syntaxin / epimorphin family signature. 239 278 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed03g1942 329 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 233 295 IPR000727 -
Sed03g1942 329 SMART tSNARE_6 228 295 IPR000727 -
Sed03g1942 329 CDD SNARE_syntaxin16 237 294 - -
Sed03g1942 329 Gene3D - 79 287 - -
Sed03g1942 329 PANTHER SYNTAXIN 92 313 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed03g1942 329 SMART SynN_4 73 188 IPR006011 GO:0016020(InterPro)
Sed03g1942 329 FunFam Syntaxin-43 79 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1942 Sed-Chr3:13505885 Sed11g0396 Sed-Chr11:3785915 1.10E-116 dispersed
Sed03g1942 Sed-Chr3:13505885 Sed03g1943 Sed-Chr3:13505885 1.80E-127 tandem
Sed11g0395 Sed-Chr11:3785915 Sed03g1942 Sed-Chr3:13505885 5.20E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1942 K08489 - csv:101207998 568.155