Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1943 ATGGCGTCGAGGAATCGGACTTTTGTTTTCAAGAAATACAGGGACGCGTTGAGGAGTGTGAGGGCCCCTACCAGCTCCTCGCTTGCTTCCGCATCGCCGTCGACTAGTTCCGGCGATGGTGGACCGGTGATTGAAATGGTTAGCTCCTCTCTGTTGCGTCCCAATCAGTCCTACGCTCCATTGAGTACTGAGGATCCCGGTAATTCAAGTAAGGGTGCTCTCACAGTGGGTCTACCTCCGGCTTGGGTGGATGTATCGGAAGAAATAGCTGCAAACGTGCAGCGTGCACGATTGAAGATGGTGGAGTTGGCTAAAGCTCATGCAAAGGCTTTGATGCCTTCATTTGGAGATGGTAAAGAAGATCAACGATTAATTGAGTCTCTCACGCAAGACGTCACTAATTTGATCAAGAAGTCAGAAAAGGGGCTCAAGAGACTCTCTGTAGCTGGACCTTCCGAGGATTCCAATATCAGAAAAAATGTTCAGCGATCTCTTGCCACCGACCTTCAGAACCTTTCCGTGGAGCTTCGCAAGAAACAATCAACTTATTTAAATCGCCTACGGCAGCAAAAAGAGGAAGTTCAAGATGGGATAGACATAGAGATGAATCTAAACGGAAATAGATCGAAAATGGAGGACGATGATTTAGACGACATGGTATTTAACGAGCATCAGATGGCTAAGCTGCGAAAGAGTGAAGCGTTCACTGCCGAAAGAGAGAAAGAGATCCAACATGTGAGTAGAAAAGCACTTACCCTACATTCTCCATTTCTGTATACATCTTTATTCAACCATTTCACTTTGTCCTAG 810 46.3 MASRNRTFVFKKYRDALRSVRAPTSSSLASASPSTSSGDGGPVIEMVSSSLLRPNQSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARLKMVELAKAHAKALMPSFGDGKEDQRLIESLTQDVTNLIKKSEKGLKRLSVAGPSEDSNIRKNVQRSLATDLQNLSVELRKKQSTYLNRLRQQKEEVQDGIDIEMNLNGNRSKMEDDDLDDMVFNEHQMAKLRKSEAFTAEREKEIQHVSRKALTLHSPFLYTSLFNHFTLS 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13505885 13509816 + Sed0016078.2 Sed03g1943 707430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1943 269 Gene3D - 79 259 - -
Sed03g1943 269 MobiDBLite consensus disorder prediction 22 45 - -
Sed03g1943 269 SUPERFAMILY t-snare proteins 77 255 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed03g1943 269 SMART SynN_4 73 188 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1943 Sed-Chr3:13505885 Sed11g0396 Sed-Chr11:3785915 2.70E-121 dispersed
Sed03g1942 Sed-Chr3:13505885 Sed03g1943 Sed-Chr3:13505885 1.80E-127 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1943 K08489 - csv:101207998 419.083