Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1959 ATGGGAGGTTTGAGTGAAGGTCTAACACAGTTGCTGATACCTGTAGCTGCTTTGCTTGGTATTGGATTTGCACTTCTTCAATGGCTTTTGGTCTCAAGAGTTAAGGTTTCTGGCTACGCTGATGATGAGAGCCAAGAAAACAGTTTGATTGAAAGAGGACAAGAGGAAGGTATCGACGATCGCGAGGTTGTCGCAAAGTGTGCCGAAATCCAGAAGGCTATTTCTGTTGGAGCAACCTCATTTTTATTCACTCAGTATAAGTACCTTGTTGTGTTCATGGTAGCATTTGGAGCCATAATTTTTGTGTTCCTTGGCTCAGTTAAGAGCTTCAGCACCAAAAGTGAACCTTGCACATACAACAAAGGACAGATGTGTAAGCCAGCTCTAGCCAATGCCATCTTTACCACAATTGCCTTCTTCCTAGGTGCTCTCACCTCAGTTCTATCTGGTTTCCTTGGAATGAAGATTGCAACTTACGCAAATGCTCGAACGAGCCTAGAAGCACGAAAAGGCATCGGTAGAGCATTCGCTATCGCCTTTCGCTCTGGTGCTGTGATGGGGTTTCTTCTTGCTGCCAATGGCCTCCTTGTATTATATGCCTCCATCAATTTATTTAAGCTGTATTATGGCGACGATTGGGAAGGATTGTTCGAATCTATCACAGGTTACGGTCTTGGAGGTTCTTCAATGGCATTGTTTGGGAGAGTTGGGGGAGGTATATATACAAAAGCAGCTGATGTTGGAGCTGATCTTGTTGGGAAAATTGAAAAGAATATCCCTGAAGACGATCCACGAAATCCTGCTGTTATAGCTGACAATGTGGGTGACAATGTAGGAGACATTGCAGGAATGGGATCTGACTTATTTGGATCTTATGCAGAATCAACCTGTGCAGCTCTTTTCGTAGCGTCGATATCGTCCTTCGGCTTCACACATAACTACACTGCCATGTCGTACCCTCTCCTTGTAAGCTCAATGGGCATTGTGATTTGCTTAATAACTACACTTTTTGCAACTGATCTCATTGAGATCAAGGAAGTGAGTCAAATCGAACCGTCGTTAAAGCGACAGCTTCTTATCTCCACCGTGCTGATGACGGTAGGGATAGCTCTGGTCAGCTTTGTTGCCTTACCTTCAAAATTCACTCTCTACGATTTCGGCACCGACAAGGTTGTAAAGAACTGGCACCTTTTCTTCTGTGTTGTGATAGGATTATGGGCAGGACTTGTTATTGGATATACAACCGAGTATTACACTAGCAATGCTTACAGTCCAGTGCAGGATGTGGCTGATTCTTGTAGAACCGGTGCTGCAACGAATGTAATATTTGGTTTAGCTCTCGGATACAAATCCGTCATCATTCCCATATTTTCGATCGCCTTATCCATTTACGTGAGCTTCCGATTAGCAGCCATGTATGGTATTGCAATGGCCGCTTTGGGAATGCTTAGCACCATTGCCACTGGTCTAGCCATTGATGCTTATGGACCTATAAGTGACAATGCAGGTGGAATAGCTGAAATGGCTGGAATGAGCCACGAGATACGCGAGCGGACCGATGCTTTAGACGCAGCTGGAAACACGACCGCAGCCATAGGAAAGGGATTTGCCATTGGATCAGCTGCTCTTGTTTCCCTGGCCTTGTTCGGCGCCTTTGTGAGCCGAGCAGGCATCGAAACAGTCAACATCATGAACCCGAAAGTGTTCATTGGATTGATAGTAGGTGCAATGCTTCCATACTGGTTTTCAGCCATGACAATGAAGAGCGTTGGCAGTGCAGCGCTGAAGATGGTCGAGGAAGTTCGACGACAATTCAACTCGATCCCAGGGCTGATGGAAGGTAGGACGAAGCCGGACTATGCAAATTGTGTCAAGATATCGACCGATGCGTCGCTTAGAGAGATGATACCTCCTGGTGCCCTGGTCTTGGTATCACCACTCATTGCTGGAACATTTTTTGGAGTTGAAACTCTTGCTGGCCTTCTGGCTGGTTCCCTTGTTTCTGGTGTTCAGGTTGCAATCTCTGCTTCAAACACAGGTGGGGCTTGGGATAATGCAAAAAAGTACATAGAGGCGGGAGCGAGCGAGCATGCTAAAGCACTTGGTCCCAAAGGGTCAGAGGCTCACAAGGCAGCTGTGATAGGTGACACTATTGGGGACCCTTTGAAAGACACTTCTGGTCCTTCACTCAATATTCTCATAAAACTCATGGCTGTTGAGTCTTTGGTTTTTGCCCCATTCTTTGCTGCTCATGGTGGCCTCATTTTCAAGCACATATAA 2280 45.96 MGGLSEGLTQLLIPVAALLGIGFALLQWLLVSRVKVSGYADDESQENSLIERGQEEGIDDREVVAKCAEIQKAISVGATSFLFTQYKYLVVFMVAFGAIIFVFLGSVKSFSTKSEPCTYNKGQMCKPALANAIFTTIAFFLGALTSVLSGFLGMKIATYANARTSLEARKGIGRAFAIAFRSGAVMGFLLAANGLLVLYASINLFKLYYGDDWEGLFESITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKIEKNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESTCAALFVASISSFGFTHNYTAMSYPLLVSSMGIVICLITTLFATDLIEIKEVSQIEPSLKRQLLISTVLMTVGIALVSFVALPSKFTLYDFGTDKVVKNWHLFFCVVIGLWAGLVIGYTTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFSIALSIYVSFRLAAMYGIAMAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHEIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGIETVNIMNPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNSIPGLMEGRTKPDYANCVKISTDASLREMIPPGALVLVSPLIAGTFFGVETLAGLLAGSLVSGVQVAISASNTGGAWDNAKKYIEAGASEHAKALGPKGSEAHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFAAHGGLIFKHI 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13592004 13599212 - Sed0027415.1 Sed03g1959 707446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1959 759 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 12 757 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Sed03g1959 759 NCBIfam V-type H(+)-translocating pyrophosphatase 9 754 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Sed03g1959 759 Hamap Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 7 749 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Sed03g1959 759 PIRSF H+-PPtase 13 757 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Sed03g1959 759 Pfam Inorganic H+ pyrophosphatase 64 744 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1959 Sed-Chr3:13592004 Sed12g2342 Sed-Chr12:33387368 0.00E+00 dispersed
Sed03g1959 Sed-Chr3:13592004 Sed08g0630 Sed-Chr8:4396998 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1959 K23025 - csv:101205277 1405.58