Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1966 ATGGAAGGCCCTCTCTTGCAAAAAGTGTGCGCTCTCTATGACCAAATCTCGAGCCTCACCAGCCTCACCCCTTCCAAGAATGTCGACACTCTTTTCACCCAACTCGTTCTCACGTGCTCCCCGCCCGCCCCCGGCCTCGATATAGCCTCCTTGCCCGAGCCGCTTCGGGCCATGAGGGCTCATCTCATCCGCCTTTGTGCACGCGCCGAGGCGCTTCTTGAAGTCCACTTCTCTGCTATCTTGTCGTCCTTCGACAACCCCATTCGTAACTTGTCTATCTTCCCTTACTACTCTAATTACTTGAAGCTCTCCCTCCTTGAGTTTAATATTTTGACCTCTCATTGCCCCTTCATCCCGACTACCGTTGCATTTGTTGGCTCTGGCCCACTCCCGCTCTCCTCCATTGTCTTGGCATCCACCCATCTTAAAGGTACGGTTATTCACAACTTCGACATTGATTCGAATGCGAACTCCATGGCGGGTCGGTTGGTATGTGCTGACCCAGACTTATCGCAACGAATGGTGTTTCACACGACGGACGTAATGGAAGTAACGACGGGGTTGGGGGAGTACGAGGTGGTGTTTTTAGCAGCATTGGTGGGGTTGGAAGAGGAAGATAAGGCAAGAGTTTTGAGGCATTTAGGGAAGCATATGGCACCAGGGGCTTATTTGATGCTAAGAAGTGCACATGGGGCTAGAGCATTTTTATACCCTGTTGTTGATGTTCATGATGTTGAAGCCTCTGGATTTGAAGTTCTATCTGTGTTTCACCCTACTGATGAAGTTATAAACTCTGTTGTTATTGCAAGAAAGTTGTTCAATCTCGTCCCAAATGCCGAAGGGAGCTCGGTCGAGGATGACGATGACCCTATCGACGATGAAAAGCTAGGTATTTTGGTTAACACCCCTATTGTGTTGGCTGAAAAATGCTCAGGGTATAAAGCTTTTAGTACCATGATCAAGGAGCTTGCAATGGAATAG 981 48.93 MEGPLLQKVCALYDQISSLTSLTPSKNVDTLFTQLVLTCSPPAPGLDIASLPEPLRAMRAHLIRLCARAEALLEVHFSAILSSFDNPIRNLSIFPYYSNYLKLSLLEFNILTSHCPFIPTTVAFVGSGPLPLSSIVLASTHLKGTVIHNFDIDSNANSMAGRLVCADPDLSQRMVFHTTDVMEVTTGLGEYEVVFLAALVGLEEEDKARVLRHLGKHMAPGAYLMLRSAHGARAFLYPVVDVHDVEASGFEVLSVFHPTDEVINSVVIARKLFNLVPNAEGSSVEDDDDPIDDEKLGILVNTPIVLAEKCSGYKAFSTMIKELAME 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13667117 13668684 + Sed0010942.1 Sed03g1966 707453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1966 326 PANTHER NICOTIANAMINE SYNTHASE 3 5 274 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Sed03g1966 326 Gene3D Vaccinia Virus protein VP39 7 272 IPR029063 -
Sed03g1966 326 Pfam Nicotianamine synthase protein 5 273 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Sed03g1966 326 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Sed03g1966 326 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 258 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1966 K05953 - - csv:101203651 453.751
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1966 Sed-Chr3:13667117 Sed04g0413 Sed-Chr4:3026762 2.60E-94 dispersed
Sed11g0410 Sed-Chr11:3960990 Sed03g1966 Sed-Chr3:13667117 3.20E-85 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed11g0410 . 1 276 Nicotianamine Synthase Gene Family AT1G09240 62.8 5.7e-94 342.0
Sed04g0413 . 1 273 Nicotianamine Synthase Gene Family AT1G09240 59.3 7.8e-91 331.6
Sed03g1966 . 5 271 Nicotianamine Synthase Gene Family AT1G09240 59.5 7.3e-89 325.1
Sed11g0754 . 16 286 Nicotianamine Synthase Gene Family AT1G09240 51.6 4.7e-72 269.2
Sed04g0413 . 3 273 Nicotianamine Synthase Gene Family AT1G56430 62.6 3.3e-97 352.8
Sed11g0410 . 3 276 Nicotianamine Synthase Gene Family AT1G56430 63.6 9.0e-95 344.7
Sed03g1966 . 5 312 Nicotianamine Synthase Gene Family AT1G56430 55.6 1.3e-93 340.9
Sed11g0754 . 18 281 Nicotianamine Synthase Gene Family AT1G56430 52.4 1.0e-74 278.1
Sed03g1966 . 5 272 Nicotianamine Synthase Gene Family AT5G04950 60.1 1.6e-91 334.0
Sed11g0410 . 1 276 Nicotianamine Synthase Gene Family AT5G04950 59.1 2.0e-91 333.6
Sed04g0413 . 1 273 Nicotianamine Synthase Gene Family AT5G04950 56.2 1.9e-89 327.0
Sed03g1966 . 5 272 Nicotianamine Synthase Gene Family AT5G56080 60.4 7.8e-91 331.6
Sed11g0410 . 1 276 Nicotianamine Synthase Gene Family AT5G56080 58.6 2.3e-90 330.1
Sed04g0413 . 1 273 Nicotianamine Synthase Gene Family AT5G56080 57.5 1.1e-89 327.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125