Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1966 ATGGAAGGCCCTCTCTTGCAAAAAGTGTGCGCTCTCTATGACCAAATCTCGAGCCTCACCAGCCTCACCCCTTCCAAGAATGTCGACACTCTTTTCACCCAACTCGTTCTCACGTGCTCCCCGCCCGCCCCCGGCCTCGATATAGCCTCCTTGCCCGAGCCGCTTCGGGCCATGAGGGCTCATCTCATCCGCCTTTGTGCACGCGCCGAGGCGCTTCTTGAAGTCCACTTCTCTGCTATCTTGTCGTCCTTCGACAACCCCATTCGTAACTTGTCTATCTTCCCTTACTACTCTAATTACTTGAAGCTCTCCCTCCTTGAGTTTAATATTTTGACCTCTCATTGCCCCTTCATCCCGACTACCGTTGCATTTGTTGGCTCTGGCCCACTCCCGCTCTCCTCCATTGTCTTGGCATCCACCCATCTTAAAGGTACGGTTATTCACAACTTCGACATTGATTCGAATGCGAACTCCATGGCGGGTCGGTTGGTATGTGCTGACCCAGACTTATCGCAACGAATGGTGTTTCACACGACGGACGTAATGGAAGTAACGACGGGGTTGGGGGAGTACGAGGTGGTGTTTTTAGCAGCATTGGTGGGGTTGGAAGAGGAAGATAAGGCAAGAGTTTTGAGGCATTTAGGGAAGCATATGGCACCAGGGGCTTATTTGATGCTAAGAAGTGCACATGGGGCTAGAGCATTTTTATACCCTGTTGTTGATGTTCATGATGTTGAAGCCTCTGGATTTGAAGTTCTATCTGTGTTTCACCCTACTGATGAAGTTATAAACTCTGTTGTTATTGCAAGAAAGTTGTTCAATCTCGTCCCAAATGCCGAAGGGAGCTCGGTCGAGGATGACGATGACCCTATCGACGATGAAAAGCTAGGTATTTTGGTTAACACCCCTATTGTGTTGGCTGAAAAATGCTCAGGGTATAAAGCTTTTAGTACCATGATCAAGGAGCTTGCAATGGAATAG 981 48.93 MEGPLLQKVCALYDQISSLTSLTPSKNVDTLFTQLVLTCSPPAPGLDIASLPEPLRAMRAHLIRLCARAEALLEVHFSAILSSFDNPIRNLSIFPYYSNYLKLSLLEFNILTSHCPFIPTTVAFVGSGPLPLSSIVLASTHLKGTVIHNFDIDSNANSMAGRLVCADPDLSQRMVFHTTDVMEVTTGLGEYEVVFLAALVGLEEEDKARVLRHLGKHMAPGAYLMLRSAHGARAFLYPVVDVHDVEASGFEVLSVFHPTDEVINSVVIARKLFNLVPNAEGSSVEDDDDPIDDEKLGILVNTPIVLAEKCSGYKAFSTMIKELAME 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13667117 13668684 + Sed0010942.1 Sed03g1966 707453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1966 326 PANTHER NICOTIANAMINE SYNTHASE 3 5 274 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Sed03g1966 326 Gene3D Vaccinia Virus protein VP39 7 272 IPR029063 -
Sed03g1966 326 Pfam Nicotianamine synthase protein 5 273 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Sed03g1966 326 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Sed03g1966 326 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 258 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1966 Sed-Chr3:13667117 Sed04g0413 Sed-Chr4:3026762 2.60E-94 dispersed
Sed11g0410 Sed-Chr11:3960990 Sed03g1966 Sed-Chr3:13667117 3.20E-85 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1966 K05953 - csv:101203651 453.751