Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1968 ATGGAAGAGTTTTACAGGCTCAACAACTCTGTTTTATCCTCATTCAGTAATGGAGTTGAAGCCATTGCAAGCACTAGCTGTGGTGGGGATCTATTGGTGGATGATGAAATGTTTCATGAGCTTGAATTAGCAGCTGAGGCCACCACTGGCTTGAACATGTCTGACATGATCAAGACTCAAATTGTCAACCATCCCCTTTATCCCAATCTAGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACATGTGGCTTGTCTTCTTGAAGAAATTGGTCGTGAAAATCACACTCCTAGGTCTTGTATTGAGCTGGGAGCTGATCCTCAATTGGACAACTTTATGGAGTCATACTGTGAGGTCCTGCATCAATATAAGAATGAGTTATCCAAGCCATTTGATGAAGCAACAATGTTCTTGACCAACATTGAATTGGAGCTAAGCAACCTGTGTAAAGGATCGTTTACTGCGACGTCAGATTCTCATTCTGCTATGATTGACGAAGCAACCGAGACTGCGGAGGAGGAACCGAGCGGCTACGGCGAGGTGGAAATGCCGGGAAATCACGAGTCATTCAGCACGAGGCGGACGAACCAAGACCTGAAAGAAATGCTACTGAAGAAATACAGTGGCTATCTCAGCAGTCTGAAGAAAGAGTTTTTGAAAAAAAGGAAGAAAGAGAAGCTGCCAAAAGATGCAAGAATGGCTCTATTTGAGTGGTGGAACACTCACTACAAATGGCCCTATCCAACAGAAGAGGAAAAATCAAAACTTTCTGATATCACTGGTTTGGATCAAAAGCAGATAAACAACTGGTTCATAAACCAGAGAAAGCGGCATTGGAAGCCGCCCGAAGACATGCAATTTGTGCTCATGGACGGAGCCGGAGACGGGGAATGCATTAAAAGATCGAATTTTAATGGCATTGGAGAAACAGGAGGACATGTAATTTGA 957 43.68 MEEFYRLNNSVLSSFSNGVEAIASTSCGGDLLVDDEMFHELELAAEATTGLNMSDMIKTQIVNHPLYPNLVSAYIECQKVGAPPHVACLLEEIGRENHTPRSCIELGADPQLDNFMESYCEVLHQYKNELSKPFDEATMFLTNIELELSNLCKGSFTATSDSHSAMIDEATETAEEEPSGYGEVEMPGNHESFSTRRTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALFEWWNTHYKWPYPTEEEKSKLSDITGLDQKQINNWFINQRKRHWKPPEDMQFVLMDGAGDGECIKRSNFNGIGETGGHVI 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13692692 13696577 - Sed0005309.1 Sed03g1968 707455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1968 318 SUPERFAMILY Homeodomain-like 223 293 IPR009057 -
Sed03g1968 318 Pfam ELK domain 201 222 IPR005539 GO:0003677(InterPro)
Sed03g1968 318 CDD homeodomain 233 284 IPR001356 GO:0003677(InterPro)
Sed03g1968 318 ProSitePatterns 'Homeobox' domain signature. 259 282 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed03g1968 318 SMART HOX_1 223 288 IPR001356 GO:0003677(InterPro)
Sed03g1968 318 SMART KNOX2_2 102 153 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed03g1968 318 Pfam KNOX1 domain 57 98 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed03g1968 318 Pfam Homeobox KN domain 241 280 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed03g1968 318 ProSiteProfiles 'Homeobox' domain profile. 221 284 IPR001356 GO:0003677(InterPro)
Sed03g1968 318 Pfam KNOX2 domain 106 152 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed03g1968 318 SMART KNOX1_2 55 99 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed03g1968 318 Gene3D - 219 290 - -
Sed03g1968 318 ProSiteProfiles ELK domain profile. 201 221 IPR005539 GO:0003677(InterPro)
Sed03g1968 318 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 55 291 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed03g1968 318 SMART ELK_2 201 222 IPR005539 GO:0003677(InterPro)
Sed03g1968 318 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1968 Sed-Chr3:13692692 Sed06g1657 Sed-Chr6:41329472 2.10E-72 dispersed
Sed03g1968 Sed-Chr3:13692692 Sed03g1969 Sed-Chr3:13692692 4.10E-145 tandem
Sed11g0411 Sed-Chr11:3964584 Sed03g1968 Sed-Chr3:13692692 4.60E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37908 PF03791 KNOX2 3.70E-21 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1968 - - - 0.0