Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1969 | ATGGAAGAGTTTTACAGGCTCAACAACTCTGTTTTATCCTCATTCAGTAATGGAGTTGAAGCCATTGCAAGCACTAGCTGTGGTGGGGATCTATTGGTGGATGATGAAATGTTTCATGAGCTTGAATTAGCAGCTGAGGCCACCACTGGCTTGAACATGTCTGACATGATCAAGACTCAAATTGTCAACCATCCCCTTTATCCCAATCTAGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACATGTGGCTTGTCTTCTTGAAGAAATTGGTCGTGAAAATCACACTCCTAGGTCTTGTATTGAGCTGGGAGCTGATCCTCAATTGGACAACTTTATGGAGTCATACTGTGAGGTCCTGCATCAATATAAGAATGAGTTATCCAAGCCATTTGATGAAGCAACAATGTTCTTGACCAACATTGAATTGGAGCTAAGCAACCTGTGTAAAGGATCGTTTACTGCGACGTCAGATTCTCATTCTGCTATGATTGACGAAGCAACCGAGACTGCGGAGGAGGAACCGAGCGGCTACGGCGAGGTGGAAATGCCGGGAAATCACGAGTCATTCAGCACGAGGCGGACGAACCAAGACCTGAAAGAAATGCTACTGAAGAAATACAGTGGCTATCTCAGCAGTCTGAAGAAAGAGTTTTTGAAAAAAAGGAAGAAAGAGAAGCTGCCAAAAGATGCAAGAATGGCTCTATTTGAGTGGTGGAACACTCACTACAAATGGCCCTATCCAACAGTAATTTCAAATCCCTTCCCATTTCTAAATATTCCACAAAATTAA | 801 | 43.07 | MEEFYRLNNSVLSSFSNGVEAIASTSCGGDLLVDDEMFHELELAAEATTGLNMSDMIKTQIVNHPLYPNLVSAYIECQKVGAPPHVACLLEEIGRENHTPRSCIELGADPQLDNFMESYCEVLHQYKNELSKPFDEATMFLTNIELELSNLCKGSFTATSDSHSAMIDEATETAEEEPSGYGEVEMPGNHESFSTRRTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALFEWWNTHYKWPYPTVISNPFPFLNIPQN | 266 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 13692692 | 13696577 | - | Sed0005309.2 | Sed03g1969 | 707456 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1969 | 266 | Pfam | KNOX2 domain | 106 | 152 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed03g1969 | 266 | Pfam | ELK domain | 201 | 222 | IPR005539 | GO:0003677(InterPro) | |
Sed03g1969 | 266 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 55 | 252 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed03g1969 | 266 | SMART | KNOX1_2 | 55 | 99 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed03g1969 | 266 | Pfam | KNOX1 domain | 57 | 98 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed03g1969 | 266 | ProSiteProfiles | ELK domain profile. | 201 | 221 | IPR005539 | GO:0003677(InterPro) | |
Sed03g1969 | 266 | SMART | ELK_2 | 201 | 222 | IPR005539 | GO:0003677(InterPro) | |
Sed03g1969 | 266 | SMART | KNOX2_2 | 102 | 153 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed03g1969 | 266 | MobiDBLite | consensus disorder prediction | 174 | 197 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1969 | Sed-Chr3:13692692 | Sed11g0411 | Sed-Chr11:3964584 | 6.00E-105 | dispersed | |
Sed03g1968 | Sed-Chr3:13692692 | Sed03g1969 | Sed-Chr3:13692692 | 4.10E-145 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1969 | - | - | - | 0.0 |