Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1969 ATGGAAGAGTTTTACAGGCTCAACAACTCTGTTTTATCCTCATTCAGTAATGGAGTTGAAGCCATTGCAAGCACTAGCTGTGGTGGGGATCTATTGGTGGATGATGAAATGTTTCATGAGCTTGAATTAGCAGCTGAGGCCACCACTGGCTTGAACATGTCTGACATGATCAAGACTCAAATTGTCAACCATCCCCTTTATCCCAATCTAGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACATGTGGCTTGTCTTCTTGAAGAAATTGGTCGTGAAAATCACACTCCTAGGTCTTGTATTGAGCTGGGAGCTGATCCTCAATTGGACAACTTTATGGAGTCATACTGTGAGGTCCTGCATCAATATAAGAATGAGTTATCCAAGCCATTTGATGAAGCAACAATGTTCTTGACCAACATTGAATTGGAGCTAAGCAACCTGTGTAAAGGATCGTTTACTGCGACGTCAGATTCTCATTCTGCTATGATTGACGAAGCAACCGAGACTGCGGAGGAGGAACCGAGCGGCTACGGCGAGGTGGAAATGCCGGGAAATCACGAGTCATTCAGCACGAGGCGGACGAACCAAGACCTGAAAGAAATGCTACTGAAGAAATACAGTGGCTATCTCAGCAGTCTGAAGAAAGAGTTTTTGAAAAAAAGGAAGAAAGAGAAGCTGCCAAAAGATGCAAGAATGGCTCTATTTGAGTGGTGGAACACTCACTACAAATGGCCCTATCCAACAGTAATTTCAAATCCCTTCCCATTTCTAAATATTCCACAAAATTAA 801 43.07 MEEFYRLNNSVLSSFSNGVEAIASTSCGGDLLVDDEMFHELELAAEATTGLNMSDMIKTQIVNHPLYPNLVSAYIECQKVGAPPHVACLLEEIGRENHTPRSCIELGADPQLDNFMESYCEVLHQYKNELSKPFDEATMFLTNIELELSNLCKGSFTATSDSHSAMIDEATETAEEEPSGYGEVEMPGNHESFSTRRTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALFEWWNTHYKWPYPTVISNPFPFLNIPQN 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13692692 13696577 - Sed0005309.2 Sed03g1969 707456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1969 266 Pfam KNOX2 domain 106 152 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed03g1969 266 Pfam ELK domain 201 222 IPR005539 GO:0003677(InterPro)
Sed03g1969 266 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 55 252 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed03g1969 266 SMART KNOX1_2 55 99 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed03g1969 266 Pfam KNOX1 domain 57 98 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed03g1969 266 ProSiteProfiles ELK domain profile. 201 221 IPR005539 GO:0003677(InterPro)
Sed03g1969 266 SMART ELK_2 201 222 IPR005539 GO:0003677(InterPro)
Sed03g1969 266 SMART KNOX2_2 102 153 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed03g1969 266 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1969 Sed-Chr3:13692692 Sed11g0411 Sed-Chr11:3964584 6.00E-105 dispersed
Sed03g1968 Sed-Chr3:13692692 Sed03g1969 Sed-Chr3:13692692 4.10E-145 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1969 - - - 0.0