Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1983 ATGAGTGCTAAAGCTGACAGGCGCGAAGTGAACCAAATCACCACACATAGGATGCGAAGGGGACAAAGCCCGGTTGACGAAAATGAGTTGAAGGTCAATGGATTCTCTAGAAATGGAGAAGATGGACGAAAACCTACTGTTCAAGCCCAGGACATTCTACAAATACAACAGCAACAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTTCTACATCTTAGGTCCCTCAAGGTTTTGCTTGTAGAAAATGATGACTCCACTCGCCATCTAGTTACTGCACTGCTTCGTAATTGCAGTTACGAAGTTATTGCAGCTGCAAATGGACTACACGCATGGAAGATGCTAGAAGATCTGTCAAATCACATAGATCTTGTCTTAACAGAGGTGGTCATGCCTTTCTTATCTGGGGTCGGTCTTTTAAGCAAGATTATGAGCCACAAAACAAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCTATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTCGATTTTTTAGTGAAGCCCATTCGGAAGAATGAGCTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGCCATAGCTCTAGCGGTAGTGGAAGTGAAAGTGGCACACAGACCCAAAAGTCTGTGAAGTCAAAAGGTGTTGAAAAGTCAGACAACAACACTGGGAGCAATGATGAAGAAGAAGACAGTGAGAGCATTGGTTTCAATATTGGAGATGAAAGTGACGACGGTAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCATTATCTGCATCAGCATGGGATAAAAAACGTGAACATCCTGATAGCACTTGTGCTCAAGTTGTTCACTCAAATGCTGATACATTTGCTAATATTGTGCCACCTGTTTTGACCGCCGAGTGCCCGGTGCAGAAAAAGCAACTTGTTGAATTAGGCATGCACAGAAATATAGATTTACAACTTGAACTGTGTACGGAGCATCCAGCCAAGTTAGATAACAGAAAACAGAATATTATGCTTGAGATAGGATCCAGTGGATTTAATGAGCAGTTCAGCAAAGGACATCTTGACCTCAACTGTGAGAGCCCATCCAGCAAACTTAAGTATGAACAAACAACTGTTACTGGTCTTGATACCAATCTTACTGATACTAAGATGGATGCCACTGTGTTTGATGAACCGAGCAACCATCCCAAGACCACAGGCATTAAGAATAAAGATGTTACAGATTCAGAAGAATTTCCATCCCTTGAGCTTGGATTAAAAAGGCCTAGAGAAGTTCAAACGACAGGGAAAGCAGTCCAAGATGATCGCAATGTTGTCAGACGCTCAGATTCTTCAGCTTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCCGACTGGGAATGCCGGAAGTAACTCTCCTCCTGTTAACGACCTAGAAGTTACAAACCAAGAGAACATGCAAGATATTAAATCTCATTCAAGTAGCAATCCTCCCAATCAATGCTCAAATGGATATAGCAATAATAATGACATGGGGTCCACTACAAATAATGCATTTTCCAAGTCCATAGTTACAAATAACAAGTCAGCAATAGCATCAACAGTCAACTGTTTGCACCCGTCGGCAGCTTCTCAGCCTACTAAGAACAACAGCCTATCTGTTCCTGAGCTAGCAGATAATGTCAACAATGTTACAACTACAACAATGCAAGCTCAGTCTAACTGTGTGCTCAGGGAATCTCAGATTCAGCAACTTGGTCACCCGTATGATCATACCCATCAGCTTGCCCTCAATAATCAACAAATATCATCTGAGCATAATGTTTTCTCATTGAAGAAAATATCAGCTGCCACGCATTGTAGGTCGACCAATGTGTTAAATGGCCCTGTAGAAGGCAATGCTGCAAATTATAGCGTGAACGGTAGCGCCTCAGGCAGTAACCATGGAAGCAATGGCCAAAATGGAAGCTGCACTGCAGGAAATGCCAGAGGGCTGAATATGGAAAGTGATAATGGAATCGGTCAGATCAGCAGAAGTGGGGATGGAAGTGGGAGTGGAAGTGGAAGTGGAAACAAAGTGGACCAAAACAAAGTTTCACAAAGGGAAGCAGCCTTGACAAAGTTTCGCCTGAAAAGGAAGGAAAGATGCTTCCGTAAAAAGGTTCGATATCAAAGCAGAAAAAGGTTAGCAGAACAGAGACCCCGCGTGAGGGGACAGTTTGTGAGACAAAACACGAGCGAAAACACGAGCAATGTTGGAGATGGCTAA 2292 42.89 MSAKADRREVNQITTHRMRRGQSPVDENELKVNGFSRNGEDGRKPTVQAQDILQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKMLEDLSNHIDLVLTEVVMPFLSGVGLLSKIMSHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKGVEKSDNNTGSNDEEEDSESIGFNIGDESDDGSGTQSSWTKQAIEVESPRPLSASAWDKKREHPDSTCAQVVHSNADTFANIVPPVLTAECPVQKKQLVELGMHRNIDLQLELCTEHPAKLDNRKQNIMLEIGSSGFNEQFSKGHLDLNCESPSSKLKYEQTTVTGLDTNLTDTKMDATVFDEPSNHPKTTGIKNKDVTDSEEFPSLELGLKRPREVQTTGKAVQDDRNVVRRSDSSAFSRYNAGSNSNKTPTGNAGSNSPPVNDLEVTNQENMQDIKSHSSSNPPNQCSNGYSNNNDMGSTTNNAFSKSIVTNNKSAIASTVNCLHPSAASQPTKNNSLSVPELADNVNNVTTTTMQAQSNCVLRESQIQQLGHPYDHTHQLALNNQQISSEHNVFSLKKISAATHCRSTNVLNGPVEGNAANYSVNGSASGSNHGSNGQNGSCTAGNARGLNMESDNGIGQISRSGDGSGSGSGSGNKVDQNKVSQREAALTKFRLKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSENTSNVGDG 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13781527 13791335 - Sed0021728.1 Sed03g1983 707470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1983 763 MobiDBLite consensus disorder prediction 647 708 - -
Sed03g1983 763 MobiDBLite consensus disorder prediction 1 26 - -
Sed03g1983 763 MobiDBLite consensus disorder prediction 439 454 - -
Sed03g1983 763 MobiDBLite consensus disorder prediction 409 430 - -
Sed03g1983 763 SUPERFAMILY CheY-like 75 201 IPR011006 -
Sed03g1983 763 MobiDBLite consensus disorder prediction 201 218 - -
Sed03g1983 763 PANTHER TWO-COMPONENT RESPONSE REGULATOR 63 423 IPR045279 GO:0009736(InterPro)
Sed03g1983 763 Pfam Response regulator receiver domain 79 190 IPR001789 GO:0000160(InterPro)
Sed03g1983 763 CDD psREC_PRR 79 182 - -
Sed03g1983 763 Gene3D - 76 239 - -
Sed03g1983 763 MobiDBLite consensus disorder prediction 201 281 - -
Sed03g1983 763 MobiDBLite consensus disorder prediction 1 44 - -
Sed03g1983 763 Pfam CCT motif 709 751 IPR010402 GO:0005515(InterPro)
Sed03g1983 763 MobiDBLite consensus disorder prediction 399 521 - -
Sed03g1983 763 SMART REC_2 77 192 IPR001789 GO:0000160(InterPro)
Sed03g1983 763 MobiDBLite consensus disorder prediction 746 763 - -
Sed03g1983 763 FunFam Two-component response regulator-like PRR37 77 235 - -
Sed03g1983 763 ProSiteProfiles CCT domain profile. 709 751 IPR010402 GO:0005515(InterPro)
Sed03g1983 763 MobiDBLite consensus disorder prediction 735 763 - -
Sed03g1983 763 ProSiteProfiles Response regulatory domain profile. 78 196 IPR001789 GO:0000160(InterPro)
Sed03g1983 763 MobiDBLite consensus disorder prediction 249 264 - -
Sed03g1983 763 MobiDBLite consensus disorder prediction 455 521 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2330 Sed-Chr1:17608697 Sed03g1983 Sed-Chr3:13781527 6.80E-13 dispersed
Sed01g3441 Sed-Chr1:63510774 Sed03g1983 Sed-Chr3:13781527 1.70E-49 dispersed
Sed03g1983 Sed-Chr3:13781527 Sed03g1985 Sed-Chr3:13781527 0.00E+00 dispersed
Sed03g1983 Sed-Chr3:13781527 Sed03g1984 Sed-Chr3:13781527 0.00E+00 tandem
Sed14g0437 Sed-Chr14:4453361 Sed03g1983 Sed-Chr3:13781527 1.20E-307 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37909 PF00072 Response_reg 1.60E-20 CL0304 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1983 K12129 - csv:101210765 1191.41