Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1983 | ATGAGTGCTAAAGCTGACAGGCGCGAAGTGAACCAAATCACCACACATAGGATGCGAAGGGGACAAAGCCCGGTTGACGAAAATGAGTTGAAGGTCAATGGATTCTCTAGAAATGGAGAAGATGGACGAAAACCTACTGTTCAAGCCCAGGACATTCTACAAATACAACAGCAACAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTTCTACATCTTAGGTCCCTCAAGGTTTTGCTTGTAGAAAATGATGACTCCACTCGCCATCTAGTTACTGCACTGCTTCGTAATTGCAGTTACGAAGTTATTGCAGCTGCAAATGGACTACACGCATGGAAGATGCTAGAAGATCTGTCAAATCACATAGATCTTGTCTTAACAGAGGTGGTCATGCCTTTCTTATCTGGGGTCGGTCTTTTAAGCAAGATTATGAGCCACAAAACAAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCTATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTCGATTTTTTAGTGAAGCCCATTCGGAAGAATGAGCTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGCCATAGCTCTAGCGGTAGTGGAAGTGAAAGTGGCACACAGACCCAAAAGTCTGTGAAGTCAAAAGGTGTTGAAAAGTCAGACAACAACACTGGGAGCAATGATGAAGAAGAAGACAGTGAGAGCATTGGTTTCAATATTGGAGATGAAAGTGACGACGGTAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCATTATCTGCATCAGCATGGGATAAAAAACGTGAACATCCTGATAGCACTTGTGCTCAAGTTGTTCACTCAAATGCTGATACATTTGCTAATATTGTGCCACCTGTTTTGACCGCCGAGTGCCCGGTGCAGAAAAAGCAACTTGTTGAATTAGGCATGCACAGAAATATAGATTTACAACTTGAACTGTGTACGGAGCATCCAGCCAAGTTAGATAACAGAAAACAGAATATTATGCTTGAGATAGGATCCAGTGGATTTAATGAGCAGTTCAGCAAAGGACATCTTGACCTCAACTGTGAGAGCCCATCCAGCAAACTTAAGTATGAACAAACAACTGTTACTGGTCTTGATACCAATCTTACTGATACTAAGATGGATGCCACTGTGTTTGATGAACCGAGCAACCATCCCAAGACCACAGGCATTAAGAATAAAGATGTTACAGATTCAGAAGAATTTCCATCCCTTGAGCTTGGATTAAAAAGGCCTAGAGAAGTTCAAACGACAGGGAAAGCAGTCCAAGATGATCGCAATGTTGTCAGACGCTCAGATTCTTCAGCTTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCCGACTGGGAATGCCGGAAGTAACTCTCCTCCTGTTAACGACCTAGAAGTTACAAACCAAGAGAACATGCAAGATATTAAATCTCATTCAAGTAGCAATCCTCCCAATCAATGCTCAAATGGATATAGCAATAATAATGACATGGGGTCCACTACAAATAATGCATTTTCCAAGTCCATAGTTACAAATAACAAGTCAGCAATAGCATCAACAGTCAACTGTTTGCACCCGTCGGCAGCTTCTCAGCCTACTAAGAACAACAGCCTATCTGTTCCTGAGCTAGCAGATAATGTCAACAATGTTACAACTACAACAATGCAAGCTCAGTCTAACTGTGTGCTCAGGGAATCTCAGATTCAGCAACTTGGTCACCCGTATGATCATACCCATCAGCTTGCCCTCAATAATCAACAAATATCATCTGAGCATAATGTTTTCTCATTGAAGAAAATATCAGCTGCCACGCATTGTAGGTCGACCAATGTGTTAAATGGCCCTGTAGAAGGCAATGCTGCAAATTATAGCGTGAACGGTAGCGCCTCAGGCAGTAACCATGGAAGCAATGGCCAAAATGGAAGCTGCACTGCAGGAAATGCCAGAGGGCTGAATATGGAAAGTGATAATGGAATCGGTCAGATCAGCAGAAGTGGGGATGGAAGTGGGAGTGGAAGTGGAAGTGGAAACAAAGTGGACCAAAACAAAGTTTCACAAAGGGAAGCAGCCTTGACAAAGTTTCGCCTGAAAAGGAAGGAAAGATGCTTCCGTAAAAAGGTTCGATATCAAAGCAGAAAAAGGTTAGCAGAACAGAGACCCCGCGTGAGGGGACAGTTTGTGAGACAAAACACGAGCGAAAACACGAGCAATGTTGGAGATGGCTAA | 2292 | 42.89 | MSAKADRREVNQITTHRMRRGQSPVDENELKVNGFSRNGEDGRKPTVQAQDILQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKMLEDLSNHIDLVLTEVVMPFLSGVGLLSKIMSHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKGVEKSDNNTGSNDEEEDSESIGFNIGDESDDGSGTQSSWTKQAIEVESPRPLSASAWDKKREHPDSTCAQVVHSNADTFANIVPPVLTAECPVQKKQLVELGMHRNIDLQLELCTEHPAKLDNRKQNIMLEIGSSGFNEQFSKGHLDLNCESPSSKLKYEQTTVTGLDTNLTDTKMDATVFDEPSNHPKTTGIKNKDVTDSEEFPSLELGLKRPREVQTTGKAVQDDRNVVRRSDSSAFSRYNAGSNSNKTPTGNAGSNSPPVNDLEVTNQENMQDIKSHSSSNPPNQCSNGYSNNNDMGSTTNNAFSKSIVTNNKSAIASTVNCLHPSAASQPTKNNSLSVPELADNVNNVTTTTMQAQSNCVLRESQIQQLGHPYDHTHQLALNNQQISSEHNVFSLKKISAATHCRSTNVLNGPVEGNAANYSVNGSASGSNHGSNGQNGSCTAGNARGLNMESDNGIGQISRSGDGSGSGSGSGNKVDQNKVSQREAALTKFRLKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSENTSNVGDG | 763 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 13781527 | 13791335 | - | Sed0021728.1 | Sed03g1983 | 707470 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1983 | 763 | MobiDBLite | consensus disorder prediction | 647 | 708 | - | - | |
Sed03g1983 | 763 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Sed03g1983 | 763 | MobiDBLite | consensus disorder prediction | 439 | 454 | - | - | |
Sed03g1983 | 763 | MobiDBLite | consensus disorder prediction | 409 | 430 | - | - | |
Sed03g1983 | 763 | SUPERFAMILY | CheY-like | 75 | 201 | IPR011006 | - | |
Sed03g1983 | 763 | MobiDBLite | consensus disorder prediction | 201 | 218 | - | - | |
Sed03g1983 | 763 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 63 | 423 | IPR045279 | GO:0009736(InterPro) | |
Sed03g1983 | 763 | Pfam | Response regulator receiver domain | 79 | 190 | IPR001789 | GO:0000160(InterPro) | |
Sed03g1983 | 763 | CDD | psREC_PRR | 79 | 182 | - | - | |
Sed03g1983 | 763 | Gene3D | - | 76 | 239 | - | - | |
Sed03g1983 | 763 | MobiDBLite | consensus disorder prediction | 201 | 281 | - | - | |
Sed03g1983 | 763 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Sed03g1983 | 763 | Pfam | CCT motif | 709 | 751 | IPR010402 | GO:0005515(InterPro) | |
Sed03g1983 | 763 | MobiDBLite | consensus disorder prediction | 399 | 521 | - | - | |
Sed03g1983 | 763 | SMART | REC_2 | 77 | 192 | IPR001789 | GO:0000160(InterPro) | |
Sed03g1983 | 763 | MobiDBLite | consensus disorder prediction | 746 | 763 | - | - | |
Sed03g1983 | 763 | FunFam | Two-component response regulator-like PRR37 | 77 | 235 | - | - | |
Sed03g1983 | 763 | ProSiteProfiles | CCT domain profile. | 709 | 751 | IPR010402 | GO:0005515(InterPro) | |
Sed03g1983 | 763 | MobiDBLite | consensus disorder prediction | 735 | 763 | - | - | |
Sed03g1983 | 763 | ProSiteProfiles | Response regulatory domain profile. | 78 | 196 | IPR001789 | GO:0000160(InterPro) | |
Sed03g1983 | 763 | MobiDBLite | consensus disorder prediction | 249 | 264 | - | - | |
Sed03g1983 | 763 | MobiDBLite | consensus disorder prediction | 455 | 521 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2330 | Sed-Chr1:17608697 | Sed03g1983 | Sed-Chr3:13781527 | 6.80E-13 | dispersed | |
Sed01g3441 | Sed-Chr1:63510774 | Sed03g1983 | Sed-Chr3:13781527 | 1.70E-49 | dispersed | |
Sed03g1983 | Sed-Chr3:13781527 | Sed03g1985 | Sed-Chr3:13781527 | 0.00E+00 | dispersed | |
Sed03g1983 | Sed-Chr3:13781527 | Sed03g1984 | Sed-Chr3:13781527 | 0.00E+00 | tandem | |
Sed14g0437 | Sed-Chr14:4453361 | Sed03g1983 | Sed-Chr3:13781527 | 1.20E-307 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37909 | PF00072 | Response_reg | 1.60E-20 | CL0304 | Sed | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1983 | K12129 | - | csv:101210765 | 1191.41 |