Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1984 | ATGTCGGCATCTGTAGTTATTGCAGCTGCAAATGGACTACACGCATGGAAGATGCTAGAAGATCTGTCAAATCACATAGATCTTGTCTTAACAGAGGTGGTCATGCCTTTCTTATCTGGGGTCGGTCTTTTAAGCAAGATTATGAGCCACAAAACAAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCTATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTCGATTTTTTAGTGAAGCCCATTCGGAAGAATGAGCTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGCCATAGCTCTAGCGGTAGTGGAAGTGAAAGTGGCACACAGACCCAAAAGTCTGTGAAGTCAAAAGGTGTTGAAAAGTCAGACAACAACACTGGGAGCAATGATGAAGAAGAAGACAGTGAGAGCATTGGTTTCAATATTGGAGATGAAAGTGACGACGGTAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCATTATCTGCATCAGCATGGGATAAAAAACGTGAACATCCTGATAGCACTTGTGCTCAAGTTGTTCACTCAAATGCTGATACATTTGCTAATATTGTGCCACCTGTTTTGACCGCCGAGTGCCCGGTGCAGAAAAAGCAACTTGTTGAATTAGGCATGCACAGAAATATAGATTTACAACTTGAACTGTGTACGGAGCATCCAGCCAAGTTAGATAACAGAAAACAGAATATTATGCTTGAGATAGGATCCAGTGGATTTAATGAGCAGTTCAGCAAAGGACATCTTGACCTCAACTGTGAGAGCCCATCCAGCAAACTTAAGTATGAACAAACAACTGTTACTGGTCTTGATACCAATCTTACTGATACTAAGATGGATGCCACTGTGTTTGATGAACCGAGCAACCATCCCAAGACCACAGGCATTAAGAATAAAGATGTTACAGATTCAGAAGAATTTCCATCCCTTGAGCTTGGATTAAAAAGGCCTAGAGAAGTTCAAACGACAGGGAAAGCAGTCCAAGATGATCGCAATGTTGTCAGACGCTCAGATTCTTCAGCTTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCCGACTGGGAATGCCGGAAGTAACTCTCCTCCTGTTAACGACCTAGAAGTTACAAACCAAGAGAACATGCAAGATATTAAATCTCATTCAAGTAGCAATCCTCCCAATCAATGCTCAAATGGATATAGCAATAATAATGACATGGGGTCCACTACAAATAATGCATTTTCCAAGTCCATAGTTACAAATAACAAGTCAGCAATAGCATCAACAGTCAACTGTTTGCACCCGTCGGCAGCTTCTCAGCCTACTAAGAACAACAGCCTATCTGTTCCTGAGCTAGCAGATAATGTCAACAATGTTACAACTACAACAATGCAAGCTCAGTCTAACTGTGTGCTCAGGGAATCTCAGATTCAGCAACTTGGTCACCCGTATGATCATACCCATCAGCTTGCCCTCAATAATCAACAAATATCATCTGAGCATAATGTTTTCTCATTGAAGAAAATATCAGCTGCCACGCATTGTAGGTCGACCAATGTGTTAAATGGCCCTGTAGAAGGCAATGCTGCAAATTATAGCGTGAACGGTAGCGCCTCAGGCAGTAACCATGGAAGCAATGGCCAAAATGGAAGCTGCACTGCAGGAAATGCCAGAGGGCTGAATATGGAAAGTGATAATGGAATCGGTCAGATCAGCAGAAGTGGGGATGGAAGTGGGAGTGGAAGTGGAAGTGGAAACAAAGTGGACCAAAACAAAGTTTCACAAAGGGAAGCAGCCTTGACAAAGTTTCGCCTGAAAAGGAAGGAAAGATGCTTCCGTAAAAAGGTTCGATATCAAAGCAGAAAAAGGTTAGCAGAACAGAGACCCCGCGTGAGGGGACAGTTTGTGAGACAAAACACGAGCGAAAACACGAGCAATGTTGGAGATGGCTAA | 2001 | 42.53 | MSASVVIAAANGLHAWKMLEDLSNHIDLVLTEVVMPFLSGVGLLSKIMSHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKGVEKSDNNTGSNDEEEDSESIGFNIGDESDDGSGTQSSWTKQAIEVESPRPLSASAWDKKREHPDSTCAQVVHSNADTFANIVPPVLTAECPVQKKQLVELGMHRNIDLQLELCTEHPAKLDNRKQNIMLEIGSSGFNEQFSKGHLDLNCESPSSKLKYEQTTVTGLDTNLTDTKMDATVFDEPSNHPKTTGIKNKDVTDSEEFPSLELGLKRPREVQTTGKAVQDDRNVVRRSDSSAFSRYNAGSNSNKTPTGNAGSNSPPVNDLEVTNQENMQDIKSHSSSNPPNQCSNGYSNNNDMGSTTNNAFSKSIVTNNKSAIASTVNCLHPSAASQPTKNNSLSVPELADNVNNVTTTTMQAQSNCVLRESQIQQLGHPYDHTHQLALNNQQISSEHNVFSLKKISAATHCRSTNVLNGPVEGNAANYSVNGSASGSNHGSNGQNGSCTAGNARGLNMESDNGIGQISRSGDGSGSGSGSGNKVDQNKVSQREAALTKFRLKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSENTSNVGDG | 666 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 13781527 | 13791335 | - | Sed0021728.2 | Sed03g1984 | 707471 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1984 | 666 | Pfam | Response regulator receiver domain | 5 | 93 | IPR001789 | GO:0000160(InterPro) | |
Sed03g1984 | 666 | SMART | REC_2 | 1 | 95 | IPR001789 | GO:0000160(InterPro) | |
Sed03g1984 | 666 | MobiDBLite | consensus disorder prediction | 358 | 424 | - | - | |
Sed03g1984 | 666 | MobiDBLite | consensus disorder prediction | 104 | 184 | - | - | |
Sed03g1984 | 666 | Gene3D | - | 3 | 143 | - | - | |
Sed03g1984 | 666 | MobiDBLite | consensus disorder prediction | 638 | 666 | - | - | |
Sed03g1984 | 666 | MobiDBLite | consensus disorder prediction | 342 | 357 | - | - | |
Sed03g1984 | 666 | SUPERFAMILY | CheY-like | 6 | 104 | IPR011006 | - | |
Sed03g1984 | 666 | MobiDBLite | consensus disorder prediction | 312 | 333 | - | - | |
Sed03g1984 | 666 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 6 | 166 | IPR045279 | GO:0009736(InterPro) | |
Sed03g1984 | 666 | MobiDBLite | consensus disorder prediction | 649 | 666 | - | - | |
Sed03g1984 | 666 | Pfam | CCT motif | 612 | 654 | IPR010402 | GO:0005515(InterPro) | |
Sed03g1984 | 666 | MobiDBLite | consensus disorder prediction | 152 | 167 | - | - | |
Sed03g1984 | 666 | ProSiteProfiles | Response regulatory domain profile. | 1 | 99 | IPR001789 | GO:0000160(InterPro) | |
Sed03g1984 | 666 | ProSiteProfiles | CCT domain profile. | 612 | 654 | IPR010402 | GO:0005515(InterPro) | |
Sed03g1984 | 666 | MobiDBLite | consensus disorder prediction | 104 | 121 | - | - | |
Sed03g1984 | 666 | MobiDBLite | consensus disorder prediction | 550 | 611 | - | - | |
Sed03g1984 | 666 | MobiDBLite | consensus disorder prediction | 302 | 424 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1984 | Sed-Chr3:13781527 | Sed03g1986 | Sed-Chr3:13781527 | 0.00E+00 | dispersed | |
Sed03g1983 | Sed-Chr3:13781527 | Sed03g1984 | Sed-Chr3:13781527 | 0.00E+00 | tandem | |
Sed03g1984 | Sed-Chr3:13781527 | Sed03g1985 | Sed-Chr3:13781527 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37910 | PF00072 | Response_reg | 6.80E-16 | CL0304 | Sed | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1984 | K12129 | - | csv:101210765 | 1061.21 |