Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1984 ATGTCGGCATCTGTAGTTATTGCAGCTGCAAATGGACTACACGCATGGAAGATGCTAGAAGATCTGTCAAATCACATAGATCTTGTCTTAACAGAGGTGGTCATGCCTTTCTTATCTGGGGTCGGTCTTTTAAGCAAGATTATGAGCCACAAAACAAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCTATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTCGATTTTTTAGTGAAGCCCATTCGGAAGAATGAGCTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGCCATAGCTCTAGCGGTAGTGGAAGTGAAAGTGGCACACAGACCCAAAAGTCTGTGAAGTCAAAAGGTGTTGAAAAGTCAGACAACAACACTGGGAGCAATGATGAAGAAGAAGACAGTGAGAGCATTGGTTTCAATATTGGAGATGAAAGTGACGACGGTAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCATTATCTGCATCAGCATGGGATAAAAAACGTGAACATCCTGATAGCACTTGTGCTCAAGTTGTTCACTCAAATGCTGATACATTTGCTAATATTGTGCCACCTGTTTTGACCGCCGAGTGCCCGGTGCAGAAAAAGCAACTTGTTGAATTAGGCATGCACAGAAATATAGATTTACAACTTGAACTGTGTACGGAGCATCCAGCCAAGTTAGATAACAGAAAACAGAATATTATGCTTGAGATAGGATCCAGTGGATTTAATGAGCAGTTCAGCAAAGGACATCTTGACCTCAACTGTGAGAGCCCATCCAGCAAACTTAAGTATGAACAAACAACTGTTACTGGTCTTGATACCAATCTTACTGATACTAAGATGGATGCCACTGTGTTTGATGAACCGAGCAACCATCCCAAGACCACAGGCATTAAGAATAAAGATGTTACAGATTCAGAAGAATTTCCATCCCTTGAGCTTGGATTAAAAAGGCCTAGAGAAGTTCAAACGACAGGGAAAGCAGTCCAAGATGATCGCAATGTTGTCAGACGCTCAGATTCTTCAGCTTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCCGACTGGGAATGCCGGAAGTAACTCTCCTCCTGTTAACGACCTAGAAGTTACAAACCAAGAGAACATGCAAGATATTAAATCTCATTCAAGTAGCAATCCTCCCAATCAATGCTCAAATGGATATAGCAATAATAATGACATGGGGTCCACTACAAATAATGCATTTTCCAAGTCCATAGTTACAAATAACAAGTCAGCAATAGCATCAACAGTCAACTGTTTGCACCCGTCGGCAGCTTCTCAGCCTACTAAGAACAACAGCCTATCTGTTCCTGAGCTAGCAGATAATGTCAACAATGTTACAACTACAACAATGCAAGCTCAGTCTAACTGTGTGCTCAGGGAATCTCAGATTCAGCAACTTGGTCACCCGTATGATCATACCCATCAGCTTGCCCTCAATAATCAACAAATATCATCTGAGCATAATGTTTTCTCATTGAAGAAAATATCAGCTGCCACGCATTGTAGGTCGACCAATGTGTTAAATGGCCCTGTAGAAGGCAATGCTGCAAATTATAGCGTGAACGGTAGCGCCTCAGGCAGTAACCATGGAAGCAATGGCCAAAATGGAAGCTGCACTGCAGGAAATGCCAGAGGGCTGAATATGGAAAGTGATAATGGAATCGGTCAGATCAGCAGAAGTGGGGATGGAAGTGGGAGTGGAAGTGGAAGTGGAAACAAAGTGGACCAAAACAAAGTTTCACAAAGGGAAGCAGCCTTGACAAAGTTTCGCCTGAAAAGGAAGGAAAGATGCTTCCGTAAAAAGGTTCGATATCAAAGCAGAAAAAGGTTAGCAGAACAGAGACCCCGCGTGAGGGGACAGTTTGTGAGACAAAACACGAGCGAAAACACGAGCAATGTTGGAGATGGCTAA 2001 42.53 MSASVVIAAANGLHAWKMLEDLSNHIDLVLTEVVMPFLSGVGLLSKIMSHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKGVEKSDNNTGSNDEEEDSESIGFNIGDESDDGSGTQSSWTKQAIEVESPRPLSASAWDKKREHPDSTCAQVVHSNADTFANIVPPVLTAECPVQKKQLVELGMHRNIDLQLELCTEHPAKLDNRKQNIMLEIGSSGFNEQFSKGHLDLNCESPSSKLKYEQTTVTGLDTNLTDTKMDATVFDEPSNHPKTTGIKNKDVTDSEEFPSLELGLKRPREVQTTGKAVQDDRNVVRRSDSSAFSRYNAGSNSNKTPTGNAGSNSPPVNDLEVTNQENMQDIKSHSSSNPPNQCSNGYSNNNDMGSTTNNAFSKSIVTNNKSAIASTVNCLHPSAASQPTKNNSLSVPELADNVNNVTTTTMQAQSNCVLRESQIQQLGHPYDHTHQLALNNQQISSEHNVFSLKKISAATHCRSTNVLNGPVEGNAANYSVNGSASGSNHGSNGQNGSCTAGNARGLNMESDNGIGQISRSGDGSGSGSGSGNKVDQNKVSQREAALTKFRLKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSENTSNVGDG 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13781527 13791335 - Sed0021728.2 Sed03g1984 707471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1984 666 Pfam Response regulator receiver domain 5 93 IPR001789 GO:0000160(InterPro)
Sed03g1984 666 SMART REC_2 1 95 IPR001789 GO:0000160(InterPro)
Sed03g1984 666 MobiDBLite consensus disorder prediction 358 424 - -
Sed03g1984 666 MobiDBLite consensus disorder prediction 104 184 - -
Sed03g1984 666 Gene3D - 3 143 - -
Sed03g1984 666 MobiDBLite consensus disorder prediction 638 666 - -
Sed03g1984 666 MobiDBLite consensus disorder prediction 342 357 - -
Sed03g1984 666 SUPERFAMILY CheY-like 6 104 IPR011006 -
Sed03g1984 666 MobiDBLite consensus disorder prediction 312 333 - -
Sed03g1984 666 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 166 IPR045279 GO:0009736(InterPro)
Sed03g1984 666 MobiDBLite consensus disorder prediction 649 666 - -
Sed03g1984 666 Pfam CCT motif 612 654 IPR010402 GO:0005515(InterPro)
Sed03g1984 666 MobiDBLite consensus disorder prediction 152 167 - -
Sed03g1984 666 ProSiteProfiles Response regulatory domain profile. 1 99 IPR001789 GO:0000160(InterPro)
Sed03g1984 666 ProSiteProfiles CCT domain profile. 612 654 IPR010402 GO:0005515(InterPro)
Sed03g1984 666 MobiDBLite consensus disorder prediction 104 121 - -
Sed03g1984 666 MobiDBLite consensus disorder prediction 550 611 - -
Sed03g1984 666 MobiDBLite consensus disorder prediction 302 424 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1984 Sed-Chr3:13781527 Sed03g1986 Sed-Chr3:13781527 0.00E+00 dispersed
Sed03g1983 Sed-Chr3:13781527 Sed03g1984 Sed-Chr3:13781527 0.00E+00 tandem
Sed03g1984 Sed-Chr3:13781527 Sed03g1985 Sed-Chr3:13781527 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37910 PF00072 Response_reg 6.80E-16 CL0304 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1984 K12129 - csv:101210765 1061.21