Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1992 ATGTTGGACCTCAATCTCTGTATTTTCTCCGGCGACTCCTCCGACGTAACCCTCTCTCGCCGGCCGGCCCCCTTCCCCCCGGTTCAACCGCCGCCTCCTCCGGTCCGCAAGGGCCGCCGAGGACCCAAATCCAGAAGCTCCCAGTATCGCGGGGTTACGTATTATCGAAGAACAGGGAGATGGGAATCGCATATTTGGGATTGTGGGAAACAAGTCTATTTAGGTGGATTTGAGACAGCCCATTCCGCAGCCAGGACTTACGATCGAGCTGCCATCAAGTTTCGAGGGGTTAATGCGGATATAAATTTCAACATCGGCGAGTACAGTGAAGAGATCGAACAGATGAGTAATTTCAGCAAAGAGGAATTTGTGCACATTCTTCGGCGGCAGAGCACTGGATTTTCAAGAGGGAGTTCTAAATACAGAGGAGTTACTTTGCACAAATGTGGCCGATGGGAGGCTCGTATGGGCCAGTTCTTGGGCAAAAAGTATGTGTATCTAGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCCATAAAATACAATGGAAGGGAAGCTGTTACTAATTTTGATCAGAGTTCCTATGAGATGGAGATTTCTTTTGAATCTCAAAACCAAGATATGGGTGATATTGACTTGAGCTTGGGTATTGCACCTCCTTGTCCACCTAAAGACCAAAGGGACAACCTTAATGGTTCTGAAAGATCTAGGGTGATGTTTGAAAACTATGCATCTATGGCTGTGGGAGCACACCCTTCTATTATGAATTGTGCCAATTTCTTTCCAACCTACCAGGAAAGAGCAATGGAGAAGACAATGGAAGTTGAATCTTTACCAAACTGGGGATGGCAGATCCCAAGCCCTGCTTCAGTCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTTCTCCGACCGTCCCCCCGACGCCCTTCTTCCGCCCCCACATTCCGCCCTCGGTCACAGCCTACCTCATTTCTACAACAGGACCCGAGGTCACAACCCAACACAAGGCTTAG 1041 48.9 MLDLNLCIFSGDSSDVTLSRRPAPFPPVQPPPPPVRKGRRGPKSRSSQYRGVTYYRRTGRWESHIWDCGKQVYLGGFETAHSAARTYDRAAIKFRGVNADINFNIGEYSEEIEQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMEISFESQNQDMGDIDLSLGIAPPCPPKDQRDNLNGSERSRVMFENYASMAVGAHPSIMNCANFFPTYQERAMEKTMEVESLPNWGWQIPSPASVPFFSTAASSGFPSSPTVPPTPFFRPHIPPSVTAYLISTTGPEVTTQHKA 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13831234 13836059 + Sed0003820.1 Sed03g1992 707479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1992 346 FunFam AP2-like ethylene-responsive transcription factor 47 106 - -
Sed03g1992 346 Pfam AP2 domain 139 189 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1992 346 Pfam AP2 domain 48 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1992 346 ProSiteProfiles AP2/ERF domain profile. 140 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1992 346 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 36 232 - -
Sed03g1992 346 MobiDBLite consensus disorder prediction 23 37 - -
Sed03g1992 346 FunFam AP2-like ethylene-responsive transcription factor 139 199 - -
Sed03g1992 346 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677(InterPro)
Sed03g1992 346 MobiDBLite consensus disorder prediction 18 49 - -
Sed03g1992 346 PRINTS Ethylene responsive element binding protein signature 179 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1992 346 PRINTS Ethylene responsive element binding protein signature 141 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1992 346 SMART rav1_2 48 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1992 346 SMART rav1_2 140 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1992 346 CDD AP2 47 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1992 346 CDD AP2 139 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1992 346 ProSiteProfiles AP2/ERF domain profile. 48 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1992 346 Gene3D AP2/ERF domain 139 199 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1992 346 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1992 346 SUPERFAMILY DNA-binding domain 139 198 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0736 Sed-Chr2:45089942 Sed03g1992 Sed-Chr3:13831234 1.50E-95 dispersed
Sed03g1992 Sed-Chr3:13831234 Sed10g0651 Sed-Chr10:4456660 4.40E-84 dispersed
Sed03g1992 Sed-Chr3:13831234 Sed03g1993 Sed-Chr3:13831234 1.20E-201 tandem
Sed03g1992 Sed-Chr3:13831234 Sed04g1315 Sed-Chr4:27502844 3.00E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37913 PF00847 AP2 1.00E-10 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1992 K09284 - csv:101211008 453.366