Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1993 ATGTTGGACCTCAATCTCTGTATTTTCTCCGGCGACTCCTCCGACGTAACCCTCTCTCGCCGGCCGGCCCCCTTCCCCCCGGTTCAACCGCCGCCTCCTCCGGTCCGCAAGGGCCGCCGAGGACCCAAATCCAGAAGCTCCCAGTATCGCGGGGTTACGTATTATCGAAGAACAGGGAGATGGGAATCGCATATTTGGGATTGTGGGAAACAAGTCTATTTAGGTGGATTTGAGACAGCCCATTCCGCAGCCAGGACTTACGATCGAGCTGCCATCAAGTTTCGAGGGGTTAATGCGGATATAAATTTCAACATCGGCGAGTACAGTGAAGAGATCGAACAGATGAGTAATTTCAGCAAAGAGGAATTTGTGCACATTCTTCGGCGGCAGAGCACTGGATTTTCAAGAGGGAGTTCTAAATACAGAGGAGTTACTTTGCACAAATGTGGCCGATGGGAGGCTCGTATGGGCCAGTTCTTGGGCAAAAAGTATGTGTATCTAGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCCATAAAATACAATGGAAGGGAAGCTGTTACTAATTTTGATCAGAGTTCCTATGAGATGGAGATTTCTTTTGAATCTCAAAACCAAGATATGGGTGATATTGACTTGAGCTTGGGTATTGCACCTCCTTGTCCACCTAAAGACCAAAGGGACAACCTTAATGGTTCTGAAAGATCTAGGGTGATGTTGCAGTTTGAAAACTATGCATCTATGGCTGTGGGAGCACACCCTTCTATTATGAATTGTGCCAATTTCTTTCCAACCTACCAGGAAAGAGCAATGGAGAAGACAATGGAAGTTGAATCTTTACCAAACTGGGGATGGCAGATCCCAAGCCCTGCTTCAGTCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTTCTCCGACCGTCCCCCCGACGCCCTTCTTCCGCCCCCACATTCCGCCCTCGGTCACAGCCTACCTCATTTCTACAACAGGACCCGAGGTCACAACCCAACACAAGGCTTAG 1047 48.9 MLDLNLCIFSGDSSDVTLSRRPAPFPPVQPPPPPVRKGRRGPKSRSSQYRGVTYYRRTGRWESHIWDCGKQVYLGGFETAHSAARTYDRAAIKFRGVNADINFNIGEYSEEIEQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMEISFESQNQDMGDIDLSLGIAPPCPPKDQRDNLNGSERSRVMLQFENYASMAVGAHPSIMNCANFFPTYQERAMEKTMEVESLPNWGWQIPSPASVPFFSTAASSGFPSSPTVPPTPFFRPHIPPSVTAYLISTTGPEVTTQHKA 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13831234 13836059 + Sed0003820.2 Sed03g1993 707480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1993 348 FunFam AP2-like ethylene-responsive transcription factor 47 106 - -
Sed03g1993 348 ProSiteProfiles AP2/ERF domain profile. 140 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1993 348 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 36 232 - -
Sed03g1993 348 Pfam AP2 domain 48 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1993 348 Pfam AP2 domain 139 189 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1993 348 MobiDBLite consensus disorder prediction 23 37 - -
Sed03g1993 348 FunFam AP2-like ethylene-responsive transcription factor 139 199 - -
Sed03g1993 348 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677(InterPro)
Sed03g1993 348 MobiDBLite consensus disorder prediction 18 49 - -
Sed03g1993 348 SMART rav1_2 48 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1993 348 SMART rav1_2 140 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1993 348 CDD AP2 47 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1993 348 CDD AP2 139 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1993 348 ProSiteProfiles AP2/ERF domain profile. 48 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1993 348 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1993 348 Gene3D AP2/ERF domain 139 199 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1993 348 PRINTS Ethylene responsive element binding protein signature 179 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1993 348 PRINTS Ethylene responsive element binding protein signature 141 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1993 348 SUPERFAMILY DNA-binding domain 139 198 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1993 Sed-Chr3:13831234 Sed04g1315 Sed-Chr4:27502844 1.10E-95 dispersed
Sed03g1992 Sed-Chr3:13831234 Sed03g1993 Sed-Chr3:13831234 1.20E-201 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37914 PF00847 AP2 1.00E-10 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1993 K09284 - csv:101211008 457.218