Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1997 ATGTCTCTCATGGGCTCAAAATTTGTGTTTCTTCTACTATCCTTTCTCCTCCTCTTCAATTTTGGGAAGACCCAACAACTCGTCGTAAATTACTACAATGAAACTTGCCCGAATGCGGAAGCTATAATCAAACAACAAGTTTTCTCCCTTTACAAAAAACATGGCAACTCAGCCATTCCATGGATTAGAAATCTCTTCCATGATTGCATGGTCAAGTCATGTGATGCATCTCTTTTGTTAGAGATTGAAAATGAAGAAGGTGAAATAATTTCAGAGATGAAATCTTCAAGGAGTTTTGGGATAAGGAATTTCAAATATGTAAACAAAATCAAACAAGCCCTTGAAAATGAATGCCCCAACACTGTTTCTTGTGCTGATGTTATGGCTCTTGCTGCAAGAGATGCCATTATTCTGTTAGGGGGAATGGAGATGGAAATGAAAACAGGGAGAAAAGATGGAAAAGAAAGCTATGAAGCAGTGGTGGAAGAGTTTATACCAAATCACAATGACTCTCTTTCATTGGTTCTCTCTAGCTTTGGTGACATTGGCATTGATGTTGAAGCTACTGTTGCTCTTTTAGGGGCTCACTCAGTGGGTCGGGTCCACTGCGTCAATCTAGTGAACCGGATTTACCCGACCGTCGACCCGACACTTGACCCAGAGCACGCAGAGTATCTAAAGCACAGGTGCCCCGACCCGAACCCGAACCCGAAAGCAGTCCAATACGCGAGAAACGATTTGGAAAGCCCAATGGTGCTGGACAACAACTTCTACAAAAACGTATTGGGCCGAAAGGCCCTTTTGTTGGTGGACCAGAAACTGGGCTCAAGCCCAATAACCCTTCCTTATGTCCAACAAATGGCCTCCAATAATACCTACTTTTTGGAACAATTTTCTAGGGCTGTCCTTTTGTTGTCTCAAAATAGCCCTCTCATTGGTCAAGAAGGAGAGATTAGAAAGGATTGTCGACGTGTCAACCACTAA 984 42.78 MSLMGSKFVFLLLSFLLLFNFGKTQQLVVNYYNETCPNAEAIIKQQVFSLYKKHGNSAIPWIRNLFHDCMVKSCDASLLLEIENEEGEIISEMKSSRSFGIRNFKYVNKIKQALENECPNTVSCADVMALAARDAIILLGGMEMEMKTGRKDGKESYEAVVEEFIPNHNDSLSLVLSSFGDIGIDVEATVALLGAHSVGRVHCVNLVNRIYPTVDPTLDPEHAEYLKHRCPDPNPNPKAVQYARNDLESPMVLDNNFYKNVLGRKALLLVDQKLGSSPITLPYVQQMASNNTYFLEQFSRAVLLLSQNSPLIGQEGEIRKDCRRVNH 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13867420 13870591 - Sed0024768.1 Sed03g1997 707484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1997 327 ProSiteProfiles Plant heme peroxidase family profile. 26 326 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g1997 327 Pfam Peroxidase 44 290 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g1997 327 PANTHER - 11 326 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g1997 327 SUPERFAMILY Heme-dependent peroxidases 26 326 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g1997 327 FunFam Peroxidase 30 178 - -
Sed03g1997 327 Gene3D - 30 326 - -
Sed03g1997 327 Gene3D Peroxidase, domain 2 166 305 - -
Sed03g1997 327 FunFam Peroxidase 166 305 - -
Sed03g1997 327 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g1997 327 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g1997 327 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g1997 327 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g1997 327 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g1997 327 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g1997 327 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g1997 327 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g1997 327 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g1997 327 CDD secretory_peroxidase 26 325 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed03g1997 327 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g1997 327 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g1997 327 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g1997 327 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g1997 327 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1997 Sed-Chr3:13867420 Sed08g2365 Sed-Chr8:36911627 5.50E-100 dispersed
Sed03g1997 Sed-Chr3:13867420 Sed04g1342 Sed-Chr4:27745121 4.90E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1997 K00430 - csv:101221151 531.946