Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1998 ATGATGTCTGGCATTGACTTTTCTGGTCCTTCTCTTGTTGGTGAGTTTGTTCCTCAAAAAAGCTCTCAACTTTATCATCTTCCTCATAACCCTAATCCAAACCCTCATAATAACTCTTCTCTCCCCAAGAAAAGGAGAAATTTGCCAGGAAAACCAGATCCAGAGGCAGAGGTAATTGGTCTATCTCCCAACAGTCTAATGGCAACAAACAGATTCATATGTGAAATATGCAACAAAGGGTTCCAAAGGGATCAAAACTTGCAGCTTCACAGAAGAGGGCACAATCTGCCATGGAAGCTAAGGCAGAAAAGCAGCAAAGATCAAGCAAAAAAGAAAGTTTATATCTGCCCTGAAAAGTCTTGTGTTCATCATGATCCAGCTAGAGCTCTTGGGGACTTAACTGGAATTAAAAAGCATTTTAGTAGAAAACATGGGGAAAAGAAATGGAAATGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCTGACTGGAAAGCTCACTCCAAAACTTGTGGAACCAGAGAGTACAAATGTGACTGTGGAACACTCTTTTCCAGGAAAGATAGCTTCATTACTCACAGAGCATTTTGTGACGCTTTAGCAGATGAAAGTTCAAGGCTCATTGCAAATTCAAAGCCAAATTTCATTGGCAATTCATTCGACCAATCAATCTTCAATCATGATCCCAATTCCCAAGGCGGAATCTTTGTCCAATCGGATAATAATAATAATACTAATTTCAATCATTTCAAAATTAACAACCTCATTCCCATCAACAACAACTTCCCGCCTTCTAATCTCTTCGAAATCTCGAACCGAATTCTCAGTTCGAACAAAAAAAACTCTTCCAAAATAGTGTCAGGTTGCTCGGGAGGAATGTCGGCCACGGCACTGCTTCTTAAGGCGGCACAATTGGGGTCGACAAAAAGTAATCCGTCATGCTCGGGGAATAGTGTGGGGGTTATGAGTTCGTTTGAGCAGAACGAAGGGTTGAGGGATTTTCTTGGCACGAATTCGTTAATGGAGATGACGAAATCCGGGAGCTCGGATATGGGGTTGAGCCAATTCGTTAGGAATGATCGAGGATGA 1089 41.14 MMSGIDFSGPSLVGEFVPQKSSQLYHLPHNPNPNPHNNSSLPKKRRNLPGKPDPEAEVIGLSPNSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQKSSKDQAKKKVYICPEKSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALADESSRLIANSKPNFIGNSFDQSIFNHDPNSQGGIFVQSDNNNNTNFNHFKINNLIPINNNFPPSNLFEISNRILSSNKKNSSKIVSGCSGGMSATALLLKAAQLGSTKSNPSCSGNSVGVMSSFEQNEGLRDFLGTNSLMEMTKSGSSDMGLSQFVRNDRG 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13885629 13889139 + Sed0025329.1 Sed03g1998 707485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1998 362 Gene3D Classic Zinc Finger 56 125 - -
Sed03g1998 362 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 148 172 - -
Sed03g1998 362 MobiDBLite consensus disorder prediction 23 44 - -
Sed03g1998 362 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 175 212 - -
Sed03g1998 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Sed03g1998 362 FunFam protein indeterminate-domain 12-like 51 120 - -
Sed03g1998 362 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Sed03g1998 362 Pfam Zinc finger, C2H2 type 72 94 IPR013087 -
Sed03g1998 362 SMART c2h2final6 149 169 IPR013087 -
Sed03g1998 362 SMART c2h2final6 114 144 IPR013087 -
Sed03g1998 362 SMART c2h2final6 72 94 IPR013087 -
Sed03g1998 362 MobiDBLite consensus disorder prediction 23 58 - -
Sed03g1998 362 SUPERFAMILY beta-beta-alpha zinc fingers 71 169 IPR036236 -
Sed03g1998 362 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 110 144 - -
Sed03g1998 362 Gene3D Classic Zinc Finger 127 205 - -
Sed03g1998 362 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Sed03g1998 362 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 31 322 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1998 Sed-Chr3:13885629 Sed04g1349 Sed-Chr4:27859027 6.90E-88 dispersed
Sed02g0660 Sed-Chr2:44399017 Sed03g1998 Sed-Chr3:13885629 1.50E-88 wgd
Sed03g1998 Sed-Chr3:13885629 Sed04g1348 Sed-Chr4:27859027 6.90E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37915 PF12171 zf-C2H2_jaz 4.90E-05 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1998 K25870 - csv:101221389 378.637