Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2005 ATGGCCAAGGACTCTGACCCCGCCGCCGGAGCATTCGCCGGAAAAGACTACCACGACCCCCCTCCGGCGCCGTTCGTCGACGCCGGCGAGTTCACTCAGTGGTCGTTTTACCGAGCCATCATCGCCGAGTTCATCGCCACGCTTCTGTTCTTGTACGTCACCGTTCTCACTGTCATCGGCAACAGCCACCAGTCCGACGGCGAAATATGCGGCGGCGTTGGCATTCTCGGCATTGCTTGGGCTTTCGGTGGAATGATCTTCGTTCTTGTTTACTGTACTGCTGGGATTTCAGGTGGGCACATAAATCCGGCGGTGACATTTGGGCTGCTTTTGGCTCGGAAAGTGTCTTTAGTGAGAGCCGTTTTGTATATGGTGGCTCAGTGTGTTGGGGCCATTTGTGGCTGTGCGTTGGTTAAATCCTTTCAGAAGGGTCTGTACAATCGCCACGGCGGCGGAGCTAACTCGCTCGCCCTCGGTTACAGCACCGGCACCGGCCTGGCTGCTGAGATCATCGGAACCTTTGTTCTTGTCTACACTGTCTTCTCTGCTACCGATCCCAAGAGAAGTGCCCGAGATTCTCATGTTCCCGTTCTAGCACCTCTGCCAATTGGGTTCGCCGTGTTCATGGTGCACCTTGCCACGATCCCGATCACCGGCACCGGAATCAATCCAGCTCGAAGCTTTGGTGCTGCAGTGGTGCTCAACCAGAGCAAGCCCTGGAATGACCAGTGGATTTTTTGGGTTGGACCCTTCATTGGAGCTGCCATTGCTGCTTTTTATCACCAGTTCGTTTTGAGGGCTGGAGCAGTTAAAGCTTTGGGATCATTTAGGAGTACCCACAGTGTTTAA 849 54.65 MAKDSDPAAGAFAGKDYHDPPPAPFVDAGEFTQWSFYRAIIAEFIATLLFLYVTVLTVIGNSHQSDGEICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVLYMVAQCVGAICGCALVKSFQKGLYNRHGGGANSLALGYSTGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVLNQSKPWNDQWIFWVGPFIGAAIAAFYHQFVLRAGAVKALGSFRSTHSV 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13940345 13942730 - Sed0025143.1 Sed03g2005 707492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2005 282 Pfam Major intrinsic protein 30 261 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2005 282 FunFam Probable aquaporin PIP1-2 23 280 - -
Sed03g2005 282 CDD MIP 38 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2005 282 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 278 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Sed03g2005 282 NCBIfam MIP family channel protein 42 261 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2005 282 ProSitePatterns MIP family signature. 100 108 IPR022357 -
Sed03g2005 282 Gene3D Glycerol uptake facilitator protein. 23 282 IPR023271 -
Sed03g2005 282 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2005 282 PRINTS Major intrinsic protein family signature 244 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2005 282 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2005 282 PRINTS Major intrinsic protein family signature 204 226 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2005 282 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2005 282 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2005 282 SUPERFAMILY Aquaporin-like 30 266 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2005 Sed-Chr3:13940345 Sed14g0415 Sed-Chr14:4313852 1.20E-143 dispersed
Sed03g2005 Sed-Chr3:13940345 Sed03g2006 Sed-Chr3:13955229 6.50E-134 tandem
Sed01g1247 Sed-Chr1:9290870 Sed03g2005 Sed-Chr3:13940345 1.30E-35 transposed
Sed14g0413 Sed-Chr14:4282412 Sed03g2005 Sed-Chr3:13940345 8.90E-120 wgd
Sed02g0654 Sed-Chr2:44341508 Sed03g2005 Sed-Chr3:13940345 1.50E-117 wgd
Sed03g2005 Sed-Chr3:13940345 Sed05g2850 Sed-Chr5:39649883 1.10E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2005 K09872 - csv:101214884 517.694