Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2006 ATGTCTAAGGATCTCGAAGCCGGTGGGTTCGGCGTCAAGGACTACCAGGACCCACCTCCGGCTCCACTCATCGACGCTGACGAGTTCACTCAATGGTCATTTTACCGAGCCATCATCGCCGAGTTCGTCGCCACGCTTCTCTTCCTATACGTCACCGTTCTCACCGTCATCGGCTACAAAAGCCAATCCGACACCAATAATGGCGGCGAGATCTGCGGTGGCATCGGTATTCTCGGCATTGCTTGGGCCTTCGGTGGCATGATCTTTGTCCTCGTGTACTGTACCGCTGAAATTTCCAGAGGGCATATTAACCCAGCAGTGACTTTTGGGTTGTTTTTGGCTCGAAAAGTGTCTTTGGTTAGAGCAATTTTGTACATGGCGGCTCAATGTTTGGGGGCCATTTGTGGTTGTGCATTGGTGAAATCATTCCAAAAGGCTCATTACAACCGGTACGGCGGGGGAGCCAATTCCCTCGTCGATGGCTACAGCACCGGCACTGGCTTGGCCGCGGAGATCATCGGTACTTTCGTTCTTGTTTACACCGTCTTCTCCGCGACCGATCCCGAGAGGAACGCTAGAGATTCTCATGTTCCTGTGTTGGCGCCACTACCAATTGGGTTTGCAGTGTTTATGGTTCATTTGGCCACTATTCCAATCACTGGCACTGGCATCAACCCAGCTAGAAGCCTTGGAGCTGCTGTGATATTCAACAAAGCCAAGCCTTGGGATGATCAGTGGATCTTTTGGGTTGGACCATTCATTGGAGCTGCCATTGCTGCAATTTACCACCAAATCATATTGAGGGCTGGTGCAGTTAAAGCTCTTGGATCATTCAGAAGCTCCACAGCCATTTAA 855 50.99 MSKDLEAGGFGVKDYQDPPPAPLIDADEFTQWSFYRAIIAEFVATLLFLYVTVLTVIGYKSQSDTNNGGEICGGIGILGIAWAFGGMIFVLVYCTAEISRGHINPAVTFGLFLARKVSLVRAILYMAAQCLGAICGCALVKSFQKAHYNRYGGGANSLVDGYSTGTGLAAEIIGTFVLVYTVFSATDPERNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIFNKAKPWDDQWIFWVGPFIGAAIAAIYHQIILRAGAVKALGSFRSSTAI 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13955229 13957518 + Sed0016789.1 Sed03g2006 707493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2006 284 CDD MIP 36 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2006 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2006 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2006 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2006 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2006 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2006 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2006 284 FunFam Probable aquaporin PIP1-2 21 282 - -
Sed03g2006 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Sed03g2006 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 10 280 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Sed03g2006 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Sed03g2006 284 Pfam Major intrinsic protein 28 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2006 284 NCBIfam MIP family channel protein 40 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2006 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2006 Sed-Chr3:13955229 Sed14g0414 Sed-Chr14:4291788 3.50E-143 dispersed
Sed03g2005 Sed-Chr3:13940345 Sed03g2006 Sed-Chr3:13955229 6.50E-134 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2006 K09872 - csv:101215366 504.212