Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2015 ATGGCACCCATTGAGCAAACCAACAATGAAAGTTTCTGCACCGTTACTGCTCATCCCGACCCCCTCAACTGGGGTGTGGCAGCCGAGTCGCTTAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTTGAGGAGTACCGGAGACCCCTTGTGAAGCTTGGTGGCGAGACCCTCACCATTTCTCAAGTGGCTGCCATTGCCACTCGTGATAACGATGTCATGGTGGAATTGGCAGAGTCTGCTAGAGCTGGTGTTAAAGCTAGTAGTGACTGGGTTATGGATAGCATGAGCAAAGGTACTGATAGCTATGGTGTTACTACTGGCTTTGGTGCTACCTCTCACAGAAGGACCAAACAAGGTGGTGCTCTTCAAAAGGAGTTGATTCGATTCTTGAATGCTGGCATTTTTGGAAGTGGAGCTGAGTCGAGCCACATATTGCCACACTCTGCTACTAGGGCGGCAATGTTGGTCAGAATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATCACAAAGCTGTTGAATAATAATGTCACTCCATGCTTGCCTCTTCGTGGAACAATTACCGCTTCGGGAGATCTCGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGCAGACCAAACTCTAAAGCTGTTGGACCTAATGGAGAAAATCTTGATGCTGAGGAGGCTTTCATGAAAGCTGGTATTCCTTCTGGGTTTTTTGAGTTGCAGCCTAAGGAAGGTCTTGCTCTCGTCAATGGTACTGCCGTTGGTTCTGGATTGGCTTCAATTGTTCTATTTGAAGCCAATATTTTAGCTGTATTGTCTGAGATCTTGTCAGCTATTTTTGCTGAGGTTATGCAAGGAAAACCTGAATTTACTGACTATTTGACCCATAAGTTGAAGCATCATCCTGGTCAAATTGAGGCTGCTGCTATAATGGAACATATTTTGGATGGAAGTTCTTACATGAAGACGGCTAAGAAGTTGCATGAAATGGATCCTCTTCAGAAGCCAAAGCAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATTGAAGTTATTCGATTCTCCACAAAGTCTATTGAACGAGAGATTAATTCAGTCAACGATAACCCTTTGATTGATGTTTCAAGGAACAAAGCTTTGCATGGAGGAAACTTCCAAGGAACTCCAATCGGAGTTTCTATGGACAACACTCGTTTGGCTGTTGCTTCAATTGGGAAGCTCATGTTTGCTCAATTCTCTGAACTTGTCAATGATTTCTTCAACAATGGTTTACCTTCTAATCTTTCGGCCAGTAGAAACCCGAGCTTGGATTATGGATTTAAAGGTGCTGAAATTGCCATGGCTTCATATTGTTCTGAGCTTCAATATCTTGCAAATCCTGTGACAACCCATGTCCAGAGTGCTGAGCAACACAACCAAGATGTTAACTCCCTTGGTTTAATTTCTTCACGAAAAACAGTAGAAGCTATTGATATTTTGAAACTAATGTCATCTACCTTTTTAGTTGCTCTCTGTCAAGCGATTGATCTGAGGCATTTGGAAGAAAATTTAAAGAATGTAGTGAAGAGCACAGTAAGTCAGGTGGCCAAGAAAGTTCTCGCTATGGGTGCTAATGGAACACTTCACCCATCTCGATTTTGTGAGAAAGATTTACTCAAAGTGGTTGATCGAGAATACACCTTTGCTTATGTCGATGATGCATGCAGTACCACTTATCCACTAATGCAAAAGCTGAGACAAGTTCTTGTTGAACATGCTTTAGGAAATGGCGAAGGCGAAATAAACACAGGTACATCGATCTTCCAAAAGATTGGAGCTTTTGAAGAGGAATTGAAAGCCATTTTGCCCAACGAAATAGAAAATGCAAGATTGTCCTACGAAAACGGAACATCAACAATTGATAACCAAATTAAGGAATGTCGATCTTATCCATTATACAAGTTTGTAAGAGAAGAGTTGGGAGCTGGATTGTTGACCGGAGAAAAGGTGATTTCTCCTGGAGAAGAATGCGAAAAAGTATTCACAGCTCTTTGCCAAGGAAAGTTGATTGACCCGATTCTAGAATGCCTGAAGGAGTGGAATGGTGCGCCTATCCCCATTTGCTAG 2136 42.79 MAPIEQTNNESFCTVTAHPDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDNDVMVELAESARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESSHILPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGENLDAEEAFMKAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFFNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTVEAIDILKLMSSTFLVALCQAIDLRHLEENLKNVVKSTVSQVAKKVLAMGANGTLHPSRFCEKDLLKVVDREYTFAYVDDACSTTYPLMQKLRQVLVEHALGNGEGEINTGTSIFQKIGAFEEELKAILPNEIENARLSYENGTSTIDNQIKECRSYPLYKFVREELGAGLLTGEKVISPGEECEKVFTALCQGKLIDPILECLKEWNGAPIPIC 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14065462 14067758 + Sed0008292.1 Sed03g2015 707502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2015 711 Pfam Aromatic amino acid lyase 58 534 IPR001106 -
Sed03g2015 711 SUPERFAMILY L-aspartase-like 20 711 IPR008948 GO:0003824(InterPro)
Sed03g2015 711 Gene3D - 524 645 IPR023144 -
Sed03g2015 711 FunFam Phenylalanine ammonia-lyase 258 546 - -
Sed03g2015 711 PANTHER HISTIDINE AMMONIA-LYASE 16 711 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Sed03g2015 711 NCBIfam phenylalanine ammonia-lyase 20 701 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Sed03g2015 711 CDD PAL-HAL 56 521 IPR001106 -
Sed03g2015 711 FunFam Phenylalanine ammonia-lyase 524 645 - -
Sed03g2015 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 193 209 IPR022313 GO:0016841(InterPro)
Sed03g2015 711 Gene3D - 12 257 IPR024083 -
Sed03g2015 711 FunFam Phenylalanine ammonia-lyase 12 257 - -
Sed03g2015 711 Gene3D Fumarase/aspartase (Central domain) 258 706 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2015 Sed-Chr3:14065462 Sed14g0399 Sed-Chr14:4116312 0.00E+00 dispersed
Sed03g2015 Sed-Chr3:14065462 Sed03g2016 Sed-Chr3:14082471 0.00E+00 tandem
Sed07g2256 Sed-Chr7:38456346 Sed03g2015 Sed-Chr3:14065462 0.00E+00 transposed
Sed12g1727 Sed-Chr12:28440125 Sed03g2015 Sed-Chr3:14065462 7.60E-240 transposed
Sed14g0397 Sed-Chr14:4102041 Sed03g2015 Sed-Chr3:14065462 0.00E+00 wgd
Sed03g2015 Sed-Chr3:14065462 Sed05g2829 Sed-Chr5:39482796 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2015 K10775 - csv:101218144 1328.54