Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2016 | ATGGCACCCATCGAGCAAACCAACAATGATAGTTTATGCACCGTTACTGCTCATCCCGACCCCCTCAATTGGGGTGTGGCAGCCGAGTCGCTCAAGGGAAGCCATCTCGACGAGGTGAAGCGCATGGTGGAGGAGTATCGGAGGCCCCTTGTGAAACTTGGTGGGGAGACCCTCACCATTTCCCAAGTGGCTGCCATTGCCACTCGTGATAACGATGTGATGGTGGAATTGGCTGAGTCAGCTAGAGCTGGTGTTAAAGCTAGCAGTGACTGGGTTATGGATAGCATGAGCAAAGGCACTGATAGTTATGGTGTTACTACTGGCTTTGGTGCTACCTCTCATAGAAGAACAAAACAAGGTGGTGCTCTTCAAAAAGAGTTGATACGATTCTTGAACGCTGGCATCTTTGGAAGTGGGGCTGAGTCGAGCCATATATTGCCCCATTCAGCTACTAGAGCGGCTATGATGGTAAGAATCAACACTCTTCTTCAAGGGTACTCAGGTATTAGATTTGAGATTTTGGAAGCCATTACCAAGCTCTTGAACAATAACGTCACTCCGTGCCTGCCTCTTCGCGGAACCATTACTGCTTCTGGAGATCTAGTTCCTCTTTCTTACATTGCTGGATTGCTTACTGGGCGACCAAACTCTAAGGCTGTTGGACCCAATGGAGAAAGCCTTGATGCCGAGGAGGCTTTCCAAAAAGCTGGTATTCCTTCTGGGTTTTTTGAGTTGCAACCTAAGGAAGGTCTTGCTCTTGTCAATGGTACTGCTGTTGGTTCTGGATTGGCTTCGATTGTTCTCTTTGAGGCCAATATTTTAGCTCTCTTGTCCGAGATTTTGTCAGCCATTTTCGCTGAGGTTATGAACGGAAAACCTGAATTTACTGACTATTTGACCCATAAGTTGAAACATCATCCTGGTCAAATTGAGGCTGCTGCAATTATGGAACACATTTTGGATGGAAGTTCTTACATGAAGACTGCTAAAATGTTGCATGAAATGGATCCTCTTCAAAAGCCGAAGCAAGATCGTTATGCTCTTAGAACTTCACCTCAATGGCTTGGTCCATTGATTGAAGTTATTCGGTTCTCCACAAAGTCTATTGAGAGGGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAAGCTTTACATGGAGGAAACTTCCAAGGTACTCCAATTGGAGTTTCTATGGACAACACTCGTTTGGCCGTTGCTTCAATTGGGAAGCTCATGTTTGCTCAATTCTCAGAACTTGTCAATGATTTCTACAACAATGGTTTACCTTCTAATCTTTCAGCAAGTAGAAATCCAAGCTTAGATTATGGGTTTAAAGGTGCTGAAATTGCCATGGCTTCATATTGCTCCGAGCTTCAATATCTTGCAAATCCAGTGACAACTCATGTTCAAAGTGCTGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCACGAAAAACAGCTGAAGCTATTGACATTTTGAAACTCATGTCATCTACCTTTTTGGTTGCTCTCTGCCAAGCGATTGACCTAAGGCATTTGGAAGAAAACTTGAAGAATGTAGTGAAGAGCACAGTAAGTCAGGTGGCCAAGAAAGTTCTCACTATGGGTGCTAATGGTACACTTCACCCATCACGATTTTGTGAGAAAGATTTACTCAAAGTGGTTGATCGAGAATACACCTTTGCTTATGTCGATGATGCATGCAGTGCCACTTATCCACTAATGCAAAAGTTAAGACAAGTTCTTGTTGAACATGCTCTAGGAAACGGTGAAGACGAAACAAACACAAATACGTCAATCTTCCAAAAGATTGGAGCTTTTGAAGAGGAGTTGAAAGCCATTTTACCCAAGGAAGTAGAAAGCGCAAGATTGTCCTACGAAAATGGAACATCAACAATTGATAACCAAATTAAAGAATGCCGATCTTATCCATTATACAAGTTTGTAAGGGAAGAGTTGGGAGCGGGATTGTTGACGGGAGAGAAGGTGATTTCTCCAGGAGAAGAATGTGAAAAAGTATTCACAGCTCTTTGTCAAGGAAAGTTGATTGACCCAATTCTAGAATGCTTAAAGGAATGGAATGGTGCTCCAATCCCCATCTGCTAG | 2136 | 43.07 | MAPIEQTNNDSLCTVTAHPDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDNDVMVELAESARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESSHILPHSATRAAMMVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAEEAFQKAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILALLSEILSAIFAEVMNGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKMLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNVVKSTVSQVAKKVLTMGANGTLHPSRFCEKDLLKVVDREYTFAYVDDACSATYPLMQKLRQVLVEHALGNGEDETNTNTSIFQKIGAFEEELKAILPKEVESARLSYENGTSTIDNQIKECRSYPLYKFVREELGAGLLTGEKVISPGEECEKVFTALCQGKLIDPILECLKEWNGAPIPIC | 711 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 14082471 | 14085033 | + | Sed0007864.1 | Sed03g2016 | 707503 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2016 | 711 | FunFam | Phenylalanine ammonia-lyase | 258 | 551 | - | - | |
Sed03g2016 | 711 | NCBIfam | phenylalanine ammonia-lyase | 20 | 701 | IPR005922 | GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro) | |
Sed03g2016 | 711 | FunFam | Phenylalanine ammonia-lyase | 12 | 257 | - | - | |
Sed03g2016 | 711 | Gene3D | - | 12 | 257 | IPR024083 | - | |
Sed03g2016 | 711 | Gene3D | - | 524 | 645 | IPR023144 | - | |
Sed03g2016 | 711 | Pfam | Aromatic amino acid lyase | 58 | 534 | IPR001106 | - | |
Sed03g2016 | 711 | SUPERFAMILY | L-aspartase-like | 20 | 711 | IPR008948 | GO:0003824(InterPro) | |
Sed03g2016 | 711 | CDD | PAL-HAL | 56 | 521 | IPR001106 | - | |
Sed03g2016 | 711 | PANTHER | HISTIDINE AMMONIA-LYASE | 15 | 711 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) | |
Sed03g2016 | 711 | FunFam | Phenylalanine ammonia-lyase | 524 | 645 | - | - | |
Sed03g2016 | 711 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 193 | 209 | IPR022313 | GO:0016841(InterPro) | |
Sed03g2016 | 711 | Gene3D | Fumarase/aspartase (Central domain) | 258 | 706 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2016 | Sed-Chr3:14082471 | Sed14g0399 | Sed-Chr14:4116312 | 0.00E+00 | dispersed | |
Sed03g2015 | Sed-Chr3:14065462 | Sed03g2016 | Sed-Chr3:14082471 | 0.00E+00 | tandem | |
Sed03g2016 | Sed-Chr3:14082471 | Sed03g2017 | Sed-Chr3:14094007 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2016 | K10775 | - | csv:101218144 | 1327.77 |