Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2017 ATGGCAGCCATTAACAACATTGGAGAGAGCTTGTGCCAAACCCGTAACGACCCTCTCAACTGGGGCGTGGCAGCCGAGTCACTTAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTGGAGGAGTACCGAAGGCCCCTTGTCAAGCTTGGTGGTGAAACCCTCACCATTTCCCAAGTGGCTGCTATTGCCACTCGGGATAATGATGTGATGGTGGAATTGGCTGATTCTGCTAGAGCTGGTGTTAAAGCTAGTAGTGATTGGGTTATGGAAAGTATGAGTAAAGGTACTGATAGTTATGGTGTTACTACTGGCTTTGGTGCTACCTCCCATAGAAGGACCAAAAATGGTGGTGCTCTTCAAAAAGAGTTGATTCGATTTTTGAACGCTGGCATTTTTGGAAGTGGGGCTGAGTCGAGCCATATATTGCCCCACTCGGCTACTAGGGCGGCTATGCTGGTGAGAATCAACACTCTTCTTCAAGGGTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATCACCAAGCTTTTGAACAATAACGTCACTCCGTGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTCGTTCCTCTTTCTTACATCGCTGGATTGCTCACTGGGCGACCAAACTCTAAAGCTGTTGGACCCAATGGAGAAAGTCTTGATGCCGAGGAGGCTTTCCAAAAAGCTGGTATTCCTTCTGGGTTTTTTGAGTTGCAGCCTAAGGAAGGTCTTGCCCTCGTCAATGGTACTGCCGTTGGTTCTGGATTGGCTTCAATGGTTCTCTTTGAGGCCAATATTTTGGCTGTTTTATCTGAAATTTTGTCAGCCATTTTTGCGGAGGTTATGCAAGGTAAACCTGAATTTACTGACTATTTGACCCATAAGTTGAAGCATCATCCTGGTCAAATTGAGGCTGCTGCGATAATGGAACATATTTTGGATGGAAGTTCTTACATGAAGACAGCTAAGAAGTTGCACGAAATGGATCCTCTTCAAAAGCCCAAGCAAGATCGTTACGCTCTTAGAACCTCTCCTCAATGGCTTGGTCCTTTGATTGAAGTGATCCGATTTTCAACAAAGTCTATTGAGCGAGAGATTAATTCAGTCAATGACAACCCTCTCATTGATGTTTCAAGGAATAAGGCTTTGCATGGAGGAAACTTCCAAGGAACTCCAATTGGAGTTTCCATGGACAATACTCGTTTGGCTGTTGCTTCAATTGGAAAACTCATGTTTGCTCAATTCTCAGAACTTGTCAATGATTTCTATAATAATGGTTTACCTTCTAATCTTTCAGCAAGTAGAAACCCAAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTGCCATGGCTTCATATTGCTCTGAGCTTCAATATCTTGCCAATCCAGTGACCACTCATGTCCAGAGTGCTGAGCAACACAATCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACTGAGGAAGCCATTGACATTTTGAAACTTATGTCATCTACTTTTTTGGTTGCCCTTTGCCAAGCGATTGACCTGAGGCATTTAGAAGAAAACTTGAAACATGTAGTGAAGAGCACAGTAAGTCAAGTGGCTAAGAAAGTTCTCACTACAGGTGCTAACGGTGCACTCCACCCATCACGATTTTGTGAGAAAGATTTATTAAAAGTGGTTGATCGAGAATACACATTTGCGTATATTGATGATGCATGTAGTGCCACTTATCCACTAATGCAAAAGTTGAGACAAGTTCTTGTGGAGCACGCTTTAGGAAATGGTGAAGATGAAACGAACACAAGCACTTCAATCTTCCAAAAGATTGGAGCTTTTGAAGAGGAGCTCAAAGCCATCTTGCCCAAAGAAGTAGAAAACGCAAGATTGTCCTATGAAAATGGTACGTCTAACATTGAAAACCAAATTAAAGAATGCAGATCATATCCATTATACAAGTTTGTGAGGGAAGAGTTGGGAACAAATTTGCTTACCGGAGAGAAAGTGATATCTCCGGGAGAAGAGTGTGAAAAAGTATTCACGGCTCTTTGTCAAGGAAAGATGATTGACCCGATTCTAGAATGCTTGAAGGAGTGGAACGGTGCTCCTATCCCGATCTGCTAG 2127 43.11 MAAINNIGESLCQTRNDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDNDVMVELADSARAGVKASSDWVMESMSKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGSGAESSHILPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAEEAFQKAGIPSGFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEILSAIFAEVMQGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTEEAIDILKLMSSTFLVALCQAIDLRHLEENLKHVVKSTVSQVAKKVLTTGANGALHPSRFCEKDLLKVVDREYTFAYIDDACSATYPLMQKLRQVLVEHALGNGEDETNTSTSIFQKIGAFEEELKAILPKEVENARLSYENGTSNIENQIKECRSYPLYKFVREELGTNLLTGEKVISPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIC 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14094007 14096422 + Sed0026761.1 Sed03g2017 707504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2017 708 FunFam Phenylalanine ammonia-lyase 9 254 - -
Sed03g2017 708 FunFam Phenylalanine ammonia-lyase 255 559 - -
Sed03g2017 708 CDD PAL-HAL 53 518 IPR001106 -
Sed03g2017 708 SUPERFAMILY L-aspartase-like 17 708 IPR008948 GO:0003824(InterPro)
Sed03g2017 708 Gene3D Fumarase/aspartase (Central domain) 255 703 - -
Sed03g2017 708 FunFam Phenylalanine ammonia-lyase 521 642 - -
Sed03g2017 708 PANTHER HISTIDINE AMMONIA-LYASE 14 708 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Sed03g2017 708 NCBIfam phenylalanine ammonia-lyase 17 698 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Sed03g2017 708 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 190 206 IPR022313 GO:0016841(InterPro)
Sed03g2017 708 Pfam Aromatic amino acid lyase 55 530 IPR001106 -
Sed03g2017 708 Gene3D - 521 642 IPR023144 -
Sed03g2017 708 Gene3D - 8 254 IPR024083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2017 Sed-Chr3:14094007 Sed14g0399 Sed-Chr14:4116312 0.00E+00 dispersed
Sed03g2016 Sed-Chr3:14082471 Sed03g2017 Sed-Chr3:14094007 0.00E+00 tandem
Sed03g2017 Sed-Chr3:14094007 Sed03g2018 Sed-Chr3:14102612 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2017 K10775 - csv:101218144 1315.44