Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2018 ATGTTCCAAGTAAATACCATATGCAACAGCTCTACCTATGATCCATTAAACTGGGGTGTAGCGGCTGAGTCCCTCAAGGGAAGCCATCTGGATGAGGTGAAGCGCATGGTTGAAGAGTACCGCAAGCCCCTGGTCACGCTTGATGGTGCAACCCTCACTATTGCACAAGTGGCTGCTATTGCTACTCGGGTATCTGATGTATCTATCACTCTTTCTGAGTCTACTAGAGCGGGTGTTAAAGCTAGTAGTGATTGGATTATGGAGAGTGTGAACAAAGGTATTGATAGCTATGGTGTTACTACTGGCTTTGGTGCTAATTCTCGTAGAAGAACCCAAAAAAGTGGGGATCTCCAAAAGGAGCTTGTTCGATTTTTGAATGCTGGGATCTGTGGAAGTGGAGCTGAGTCAAGCCATGCTTTGCCTCACTCTGCTACCAGAGCGGCCATGTTGGTGAGAGTTAATACTCTTCTTCAAGGCTACTCTGGTATTAGATTTGAGATTTTGGAAGCCATAACTAAACTCTTGAACTGTAACATTACTCCATGCTTGCCTCTTCGCGGAACCGTTACTGCTTCTGGAGATCTTGTTCCGCTTTCTTACCTTGCTGGATTGCTTATTGGTCGACCAAACTCTAAAGCTGTTGGTCCAAATGGTGAAAATCTTGATGCAAATGAGGCCTTCCAACAAGCTGGTATTCTTTCTGGTTTCTTTGAGTTCCAACCCAAAGAAGGTTTTGCTATTGTCAATAGTACTGCTGTTGGTTCTGGTTTGGCTTCTATTGTTCTCTTTGAAACCAATATTTTGGTGGTTTTGTCGGAAATTCTTTCAGCCATTTTTGCTGAGGTTATGCAGGGAAAACCTGAATTCACAGATTACTTGACTCATAAGTTGAAACACCATCCTGGTCAGATTGAGGCAGCAGCAATCATGGAACACATTTTGGATGGGAGTTCTTACGTGAAAACTGCCAAGGAGTTGCAAGAAATTGATCCTCTCACAAAGCCTAAACAAGATCGTTACGCTCTCAGAACTTCACCTCAATGGTTGGGTCCTTTGATTGAAGTAATTCGATTTTCCACAAAGTCAATTGAGCGAGAGATTAATTCAGTTAATGACAACCCTTTGATTGATGTTTCAAGGAATAAAACTTTACATGGTGGGAACTTCCAAGGAACTCCTATTGGAGTTTCTATGGATAACACCCGTTTGGCCATTGCATCGATTGGAAAGCTGATGTTCGCTCAATTTTCAGAACTTGTTAATGATTTATATAATAATGGGTTGCCTTCTAATCTTTCTGCAAGTAGGAACCCGAGTTTGGATTATGGGTTCAAAGGTGCTGAAATTGCTATGGCTTCATACTGTTCTGAGCTTCAATTTCTTGCAAATCCAGTAACAACTCATGTCCAAAGTGTCGATCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCGAGGAAAACAGCTGAAGCAATTGATATTCTAAAACTCATGTGTTCCACATTTTTAGTTGCTCTTTGTCAAGCCATCGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCACGGTTAAAAACATCATAAGTCAAGTAGCCAAGAAAGTGTTAATCACGTCCTATAATGATGCCCTTCATCCTTCAAAATTTAACGAGAAAGACTTATTGAAGGTTGTCGATAGAGAGTATATTTTTGCTTATATAGATGACCCATGCAATGCAACTTACCCATTAATGCAAAAATTAAGGCAAGTTCTTGTTGAACATGCTCTCGCAAATGGTGATGACGAAAAGAACCAGAACACTTCAATTTTTCAAAAGATTGCTACATTTGAAGAGGAGTTAGAGGCAAACTTGCCACAAGAAGTTGAAAGTTCGAGGTTGGCATATGAAAGTGGAAATGCACAAATTAAAAATCAGATTGAGGAATGCAGATCTTATCCATTATACAAATTCATAAGGGAAGAGTTGGGAACAAAATTATTAACCGGTGAAAAAGTGATATCTCCTGGAGAAGAATGTGAAAAGGTATTTGCCGCTTTATCTCAAGGAAAGATGATTGATTCTATCTTCGAATGTTTGAAGGAGTGGAACGGTGCTCCAATTCCTATATGTTAG 2118 40.27 MFQVNTICNSSTYDPLNWGVAAESLKGSHLDEVKRMVEEYRKPLVTLDGATLTIAQVAAIATRVSDVSITLSESTRAGVKASSDWIMESVNKGIDSYGVTTGFGANSRRRTQKSGDLQKELVRFLNAGICGSGAESSHALPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNCNITPCLPLRGTVTASGDLVPLSYLAGLLIGRPNSKAVGPNGENLDANEAFQQAGILSGFFEFQPKEGFAIVNSTAVGSGLASIVLFETNILVVLSEILSAIFAEVMQGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYVKTAKELQEIDPLTKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKTLHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDLYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQFLANPVTTHVQSVDQHNQDVNSLGLISSRKTAEAIDILKLMCSTFLVALCQAIDLRHLEENLKSTVKNIISQVAKKVLITSYNDALHPSKFNEKDLLKVVDREYIFAYIDDPCNATYPLMQKLRQVLVEHALANGDDEKNQNTSIFQKIATFEEELEANLPQEVESSRLAYESGNAQIKNQIEECRSYPLYKFIREELGTKLLTGEKVISPGEECEKVFAALSQGKMIDSIFECLKEWNGAPIPIC 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14102612 14104789 - Sed0018797.1 Sed03g2018 707505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2018 705 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 187 203 IPR022313 GO:0016841(InterPro)
Sed03g2018 705 Gene3D - 518 639 IPR023144 -
Sed03g2018 705 FunFam Phenylalanine ammonia-lyase 5 251 - -
Sed03g2018 705 PANTHER HISTIDINE AMMONIA-LYASE 10 705 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Sed03g2018 705 FunFam Phenylalanine ammonia-lyase 518 639 - -
Sed03g2018 705 Pfam Aromatic amino acid lyase 52 532 IPR001106 -
Sed03g2018 705 NCBIfam phenylalanine ammonia-lyase 14 695 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Sed03g2018 705 FunFam Phenylalanine ammonia-lyase 252 557 - -
Sed03g2018 705 CDD PAL-HAL 51 515 IPR001106 -
Sed03g2018 705 SUPERFAMILY L-aspartase-like 14 705 IPR008948 GO:0003824(InterPro)
Sed03g2018 705 Gene3D Fumarase/aspartase (Central domain) 252 700 - -
Sed03g2018 705 Gene3D - 5 251 IPR024083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2018 Sed-Chr3:14102612 Sed14g0397 Sed-Chr14:4102041 0.00E+00 dispersed
Sed03g2017 Sed-Chr3:14094007 Sed03g2018 Sed-Chr3:14102612 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2018 K10775 - csv:101218856 1203.35