Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2037 ATGCTGGTCATAACCTGCATTGTGCTGCTGCTATCCTCCCTCCTGCCGCCGGATGCCGCCATCGCTCTCAACCTCACTCTCCCTGGCCAGCATCCGAGCCCTGAACTGGTTGCTCAAGAAGTTCACAGGAAAGTGAATGCATCCGTAGCAAGAAGGCAGCTCCTCCAAACCACAGAGAAAGACGAATCATCACCCTGCTACACCGGAAACCCCATAGACGATTGCTGGAAATGCGATCCAAACTGGCCAAACAACCGTCAACGGCTCGCCGATTGCGCGATAGGGTTCGGCCAGTACGCCCTCGGCGGCAAGAACGGCGAGTTCTACATCGTCACCGACGACTCCGACGACGATCCGGTGAATCCAAAGCCGGGAACGTTGCGATTCGCGGTGATTCAGGCGCAGCCTCTGTGGATCGTGTTTCCGGCCAATATGCTCGTCAAACTCAAACAGGAACTCATCTTCAACAGCTTCAAAACCCTAGACGGCCGCGGCGCCAACGTCCACATCGTCGGCGGCGGCTGCATCACCTTGCAGTATGTAAGCAATGTGATCATCCATAACATTCACATCCACCATTGTTATCCATCAGGAAACACAATGATTCGATCGAGTCCGACGCATTACGGTTATCGGACGAAATCCGATGGCGATGGAATATCGATCTTCGGGTCGAAGGATATATGGATTGATCATTGTTCGTTGTCGCGCTGCAAGGATGGGCTAATCGATGCGGTGATGGGATCCACCGGAATCACCATTTCAAATAACTATTTCTCGCATCACGATGAGGTTATGCTATTGGGTCACAGCGATAGCTACTTGCCGGACTCTGGGATGCAGGTAACAATAGCATTCAACCACTTTGGAGAGAAGCTAGTACAGAGAATGCCACGGTGCCGACGGGGCTACATCCATGTCGTCAATAACGACTTCACCCAATGGGAAATGTACGCAATTGGCGGCAGCGCCAACCCCACGATCAACAGCCAAGGCAACCGCTTTACGGCACCATATGACCGCAATGCCAAAGAGGTAACCAAGCGCGTTGACACAGCCGAGTCCGACTGGCACGCATGGAATTGGCGCTCTGAGGGTGACATCCTCGTCAATGGGGCCTTCTTCGTGACGTCCGGCCAGGGCCTAGAAGTCAAGTACGAGAAGGCCTACAGCGTCGACCCCAAGTCTGCCGCTCTAATTGACCGGCTTACTTGGCACGCTGGCCCGCTCGGGGTCGGCGGCAGGGACAACAACTTAGGGATGTGGACCACTGGCCCTAATGGTGGAGGCTTTGCTCTTGGCTCTGACATGGATTACACTGATGACATGTCTGAAAGCCTTTCCAGGAGTGGGTCTCCCTATTTTGTTATGGTTTTGTGCTCTTTTTGTGCATTGGCACTTGCCTTTGTTTTTTCAAGTTAA 1422 53.31 MLVITCIVLLLSSLLPPDAAIALNLTLPGQHPSPELVAQEVHRKVNASVARRQLLQTTEKDESSPCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDPVNPKPGTLRFAVIQAQPLWIVFPANMLVKLKQELIFNSFKTLDGRGANVHIVGGGCITLQYVSNVIIHNIHIHHCYPSGNTMIRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSRCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDSYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRFTAPYDRNAKEVTKRVDTAESDWHAWNWRSEGDILVNGAFFVTSGQGLEVKYEKAYSVDPKSAALIDRLTWHAGPLGVGGRDNNLGMWTTGPNGGGFALGSDMDYTDDMSESLSRSGSPYFVMVLCSFCALALAFVFSS 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14287530 14291469 + Sed0007982.1 Sed03g2037 707524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2037 473 PANTHER PECTATE LYASE 18-RELATED 19 412 IPR045032 GO:0030570(InterPro)
Sed03g2037 473 FunFam Pectate lyase 69 411 - -
Sed03g2037 473 Gene3D - 69 411 IPR012334 -
Sed03g2037 473 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Sed03g2037 473 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Sed03g2037 473 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Sed03g2037 473 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Sed03g2037 473 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Sed03g2037 473 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Sed03g2037 473 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Sed03g2037 473 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Sed03g2037 473 Pfam Pectate lyase 150 335 IPR002022 -
Sed03g2037 473 SUPERFAMILY Pectin lyase-like 64 408 IPR011050 -
Sed03g2037 473 SMART amb_all 144 341 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2037 Sed-Chr3:14287530 Sed04g2044 Sed-Chr4:34840872 1.80E-152 dispersed
Sed06g2021 Sed-Chr6:44316771 Sed03g2037 Sed-Chr3:14287530 4.80E-180 transposed
Sed14g0373 Sed-Chr14:3871953 Sed03g2037 Sed-Chr3:14287530 3.80E-248 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2037 K01728 - csv:101203012 836.639